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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053519 through 18771 annotations produced 2 hits



PROJECTIN-like (Unc-89):

Annotation Number : CG30171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053519
Gbrowse : chr2R:19883065-19895668 (-) // 100.0 //
Probeset : 1623019_a_at
Accessions : protein= NP_001014545; /// NP_001097440;, nucleotide= NM_001014545; /// NM_001103970;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0053519.
BDGP gene expression has embryonic in situ data for Unc-89: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0053519 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 04 of 4 0.10Down
Head148 84 of 4 1.20None
Eye26 44 of 4 0.21Down
Thoracicoabdominal ganglion22 33 of 4 0.20Down
Salivary gland4 10 of 4 0.03Down
Crop886 344 of 4 7.00Up
Midgut30 04 of 4 0.20Down
Tubule10 11 of 4 0.10Down
Hindgut288 104 of 4 2.30Up
Heart358 394 of 4 2.84Up
Fat body20 54 of 4 0.16Down
Ovary3 10 of 4 0.00Down
Testis15 04 of 4 0.10Down
Male accessory glands75 24 of 4 0.60Down
Virgin spermatheca19 24 of 4 0.15Down
Mated spermatheca28 44 of 4 0.23Down
Adult carcass816 534 of 4 6.50Up
Larval CNS5 11 of 4 0.04Down
Larval Salivary gland13 10 of 4 0.10Down
Larval midgut24 13 of 4 0.20Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut368 114 of 4 2.92Up
Larval fat body1 00 of 4 0.00Down
Larval trachea39 174 of 4 0.31Down
Larval carcass1308 1324 of 410.37Up
S2 cells (growing)1 00 of 4 0.01Down
Whole fly126 54 of 4



PROJECTIN-like (Unc-89):

Annotation Number : CG30175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053519
Gbrowse : chr2R:19896131-19900195 (-) // 100.0 //
Probeset : 1626072_at
Accessions : protein= NP_001014545; /// NP_001097440;, nucleotide= NM_001014545; /// NM_001103970;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0053519.
BDGP gene expression has embryonic in situ data for Unc-89: 4 pix of staining in 1 body parts.
Homophila reports that CG30175 is a close match (8e-11) to human gene BEK;CFD1;FGFR2;JWS (NP_075259), a gene associated with Antley-Bixler syndrome, 207410 (;Apert syndrome, 101200 (3);Beare-Stevenson cutis gyrata syndrome, 123790 (3);Craniofacial-skeletal-dermatologic dysplasia (3);Craniosynostosis, nonspecific (3);Crouzon syndrome, 123500 (3);Gastric cancer, somatic, 137215 (3);Jackson-Weiss syndrome, 123150 (3);Pfeiffer syndrome, 101600 (3);Saethre-Chotzen syndrome, 101400 (3).
TRiP has 1 RNAi stocks for FBgn0053519 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20Down
Head4 10 of 4 1.00None
Eye0 00 of 4 0.19Down
Thoracicoabdominal ganglion5 10 of 4 1.20None
Salivary gland11 10 of 4 2.45Up
Crop2 00 of 4 0.50Down
Midgut6 20 of 4 1.30None
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.30Down
Heart2 10 of 4 0.58None
Fat body2 20 of 4 0.51None
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.30Down
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca2 00 of 4 0.45None
Mated spermatheca1 00 of 4 0.37Down
Adult carcass6 30 of 4 1.40None
Larval CNS1 10 of 4 0.43Down
Larval Salivary gland4 31 of 4 1.01None
Larval midgut1 00 of 4 0.39Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut2 00 of 4 0.52None
Larval fat body2 10 of 4 0.60None
Larval trachea3 20 of 4 0.77None
Larval carcass3 10 of 4 0.77None
S2 cells (growing)3 10 of 4 0.68None
Whole fly4 00 of 4

Looking for FBgn0053519. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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