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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053523 through 18771 annotations produced 2 hits



MSP protein (CG33523):

Annotation Number : CG32410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053523
Gbrowse : chr3L:5917154-5918466 (+) // 100.0 //
Probeset : 1638087_at
Accessions : protein= NP_001014566; /// NP_001014567; /// NP_001014568; /// NP_001014569;, nucleotide= NM_001014566; /// NM_001014567; /// NM_001014568; /// NM_001014569;
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0053523.
TRiP has 1 RNAi stocks for FBgn0053523 available for purchase.
VDRC has 4 RNAi stocks for FBgn0053523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.50Down
Head43 64 of 4 1.80None
Eye24 34 of 4 0.98None
Thoracicoabdominal ganglion14 24 of 4 0.60Down
Salivary gland14 11 of 4 0.60Down
Crop695 664 of 428.00Up
Midgut117 34 of 4 4.80Up
Tubule7 10 of 4 0.30Down
Hindgut190 44 of 4 7.70Up
Heart4 10 of 4 0.17Down
Fat body8 81 of 4 0.35Down
Ovary3 00 of 4 0.20Down
Testis39 44 of 4 1.60Up
Male accessory glands6 10 of 4 0.30Down
Virgin spermatheca2 10 of 4 0.10Down
Mated spermatheca2 00 of 4 0.09Down
Adult carcass46 24 of 4 1.90Up
Larval CNS5 23 of 4 0.21Down
Larval Salivary gland2 00 of 4 0.09Down
Larval midgut51 74 of 4 2.06Up
Larval tubule7 11 of 4 0.30Down
Larval hindgut10 14 of 4 0.44Down
Larval fat body16 33 of 4 0.70None
Larval trachea20 34 of 4 0.84None
Larval carcass9 12 of 4 0.38Down
S2 cells (growing)4 10 of 4 0.18Down
Whole fly24 14 of 4



MSP protein (CG33523):

Annotation Number : CG10977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053523
Gbrowse : chr3L:5919970-5923002 (+) // 100.0 //
Probeset : 1632338_a_at
Accessions : protein= NP_001014566; /// NP_001014567; /// NP_001014568; /// NP_001014569;, nucleotide= NM_001014566; /// NM_001014567; /// NM_001014568; /// NM_001014569;
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0053523.
TRiP has 1 RNAi stocks for FBgn0053523 available for purchase.
VDRC has 4 RNAi stocks for FBgn0053523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 114 of 4 0.60Down
Head261 104 of 4 0.80Down
Eye254 124 of 4 0.76Down
Thoracicoabdominal ganglion183 34 of 4 0.50Down
Salivary gland164 124 of 4 0.49Down
Crop1338 364 of 4 4.00Up
Midgut424 84 of 4 1.30Up
Tubule167 134 of 4 0.50Down
Hindgut620 144 of 4 1.90Up
Heart193 84 of 4 0.58Down
Fat body146 224 of 4 0.44Down
Ovary276 24 of 4 0.80Down
Testis1134 594 of 4 3.40Up
Male accessory glands676 404 of 4 2.00Up
Virgin spermatheca59 44 of 4 0.18Down
Mated spermatheca79 54 of 4 0.24Down
Adult carcass199 114 of 4 0.60Down
Larval CNS177 154 of 4 0.53Down
Larval Salivary gland62 74 of 4 0.19Down
Larval midgut325 204 of 4 0.97None
Larval tubule217 74 of 4 0.60Down
Larval hindgut159 14 of 4 0.47Down
Larval fat body316 314 of 4 0.90None
Larval trachea282 54 of 4 0.84Down
Larval carcass151 44 of 4 0.45Down
S2 cells (growing)285 74 of 4 0.85Down
Whole fly335 104 of 4

Looking for FBgn0053523. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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