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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053527 through 18771 annotations produced 1 hits



SIFamide (IFa):

Annotation Number : HDC04522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053527
Gbrowse : chr2R:20465318-20465589 (-) // 100.0 //
Probeset : 1639177_at
Accessions : protein= NP_001014550;, nucleotide= NM_001014550;
Interpro : 0005179 // hormone activity // non-traceable author statement /// 0005184 // neuropeptide hormone activity // inferred f
FlyMine data for FBgn0053527.
TRiP has 1 RNAi stocks for FBgn0053527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain443 ± 164 of 428.00Up
Head143 ± 44 of 4 9.10Up
Eye4 ± 10 of 4 0.30Down
Thoracicoabdominal ganglion13 ± 40 of 4 0.90None
Salivary gland33 ± 30 of 4 2.09Up
Crop14 ± 30 of 4 0.90None
Midgut4 ± 10 of 4 0.30Down
Tubule9 ± 10 of 4 0.60Down
Hindgut5 ± 10 of 4 0.40Down
Heart1 ± 10 of 4 0.12Down
Fat body9 ± 30 of 4 0.60None
Ovary6 ± 10 of 4 0.40Down
Testis12 ± 22 of 4 0.80None
Male accessory glands16 ± 20 of 4 1.00None
Virgin spermatheca10 ± 10 of 4 0.64None
Mated spermatheca9 ± 10 of 4 0.62None
Adult carcass15 ± 30 of 4 0.90None
Larval CNS222 ± 144 of 414.07Up
Larval Salivary gland9 ± 30 of 4 0.62None
Larval midgut2 ± 00 of 4 0.17Down
Larval tubule10 ± 20 of 4 0.70None
Larval hindgut5 ± 10 of 4 0.37Down
Larval fat body15 ± 10 of 4 1.00None
Larval trachea2 ± 30 of 4 0.16Down
Larval carcass5 ± 10 of 4 0.32Down
S2 cells (growing)7 ± 10 of 4 0.46Down
Whole fly15 ± 22 of 4

Looking for FBgn0053527. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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