FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053542 through 18771 annotations produced 2 hits

unpaired 3 (upd3):

Annotation Number : CG5963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053542
Gbrowse : chrX:18176541-18177984 (+) // 100.0 //
Probeset : 1641119_at
Accessions : protein= NP_001097014;, nucleotide= NM_001103544;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005125 // cytokine activity // non-t
FlyMine data for FBgn0053542.
TRiP has 2 RNAi stocks for FBgn0053542 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053542 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.40	None
Head	1 ± 1	0 of 4	1.20	None
Eye	0 ± 0	0 of 4	0.56	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.70	None
Salivary gland	1 ± 0	0 of 4	0.67	None
Crop	6 ± 1	0 of 4	3.80	None
Midgut	9 ± 1	0 of 4	5.90	Up
Tubule	1 ± 0	0 of 4	1.00	None
Hindgut	4 ± 1	0 of 4	2.70	None
Heart	0 ± 0	0 of 4	0.58	None
Fat body	1 ± 0	0 of 4	0.67	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.70	None
Male accessory glands	6 ± 2	0 of 4	4.00	None
Virgin spermatheca	0 ± 0	0 of 4	0.55	None
Mated spermatheca	1 ± 0	0 of 4	0.59	None
Adult carcass	3 ± 1	0 of 4	2.20	None
Larval CNS	1 ± 0	0 of 4	0.61	None
Larval Salivary gland	1 ± 0	0 of 4	1.17	None
Larval midgut	4 ± 1	0 of 4	2.82	None
Larval tubule	1 ± 1	0 of 4	1.00	None
Larval hindgut	4 ± 1	0 of 4	2.73	None
Larval fat body	3 ± 1	0 of 4	1.80	None
Larval trachea	3 ± 1	0 of 4	2.20	Up
Larval carcass	1 ± 0	0 of 4	1.03	None
S2 cells (growing)	24 ± 1	2 of 4	14.91	Up
Whole fly	1 ± 0	0 of 4

unpaired 3 (upd3):

Annotation Number : CG15062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053542
Gbrowse : chrX:18173637-18174240 (+) // 100.0 //
Probeset : 1636892_at
Accessions : protein= NP_001097014;, nucleotide= NM_001103544;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005125 // cytokine activity // non-t
FlyMine data for FBgn0053542.
TRiP has 2 RNAi stocks for FBgn0053542 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053542 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 2	1 of 4	1.00	None
Head	4 ± 0	0 of 4	1.00	None
Eye	2 ± 1	0 of 4	0.63	None
Thoracicoabdominal ganglion	6 ± 1	0 of 4	1.50	None
Salivary gland	4 ± 2	0 of 4	1.13	None
Crop	6 ± 1	0 of 4	1.50	None
Midgut	9 ± 1	0 of 4	2.30	Up
Tubule	6 ± 0	0 of 4	1.60	Up
Hindgut	8 ± 2	0 of 4	1.90	None
Heart	2 ± 1	0 of 4	0.52	None
Fat body	6 ± 1	0 of 4	1.56	None
Ovary	2 ± 0	0 of 4	0.50	None
Testis	2 ± 1	0 of 4	0.50	None
Male accessory glands	2 ± 0	0 of 4	0.50	None
Virgin spermatheca	2 ± 0	0 of 4	0.62	None
Mated spermatheca	4 ± 1	0 of 4	0.94	None
Adult carcass	8 ± 2	0 of 4	1.90	None
Larval CNS	3 ± 2	1 of 4	0.84	None
Larval Salivary gland	2 ± 0	0 of 4	0.46	None
Larval midgut	11 ± 1	0 of 4	2.72	Up
Larval tubule	4 ± 0	0 of 4	1.10	None
Larval hindgut	3 ± 0	0 of 4	0.71	None
Larval fat body	4 ± 0	0 of 4	0.90	None
Larval trachea	1 ± 0	0 of 4	0.45	None
Larval carcass	2 ± 0	0 of 4	0.54	None
S2 cells (growing)	30 ± 3	4 of 4	7.25	Up
Whole fly	4 ± 1	0 of 4

Looking for FBgn0053542. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720