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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053543 through 18771 annotations produced 2 hits



(CG33543):

Annotation Number : CG15354
Flybase ID : FBgn0053543
Gbrowse : chr2L:2000245-2002960 (-) // 100.0 //
Probeset : 1623163_at
Accessions : protein= NP_001014458;, nucleotide= NM_001014458;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0053543.
VDRC has 5 RNAi stocks for FBgn0053543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.50None
Head4 10 of 4 1.50None
Eye2 00 of 4 0.98None
Thoracicoabdominal ganglion3 11 of 4 1.10None
Salivary gland9 00 of 4 3.27Up
Crop3 20 of 4 1.30None
Midgut5 30 of 4 1.90None
Tubule3 00 of 4 1.40Up
Hindgut5 00 of 4 2.00None
Heart0 00 of 4 0.18None
Fat body4 20 of 4 1.72None
Ovary2 01 of 4 1.00None
Testis3 10 of 4 1.40None
Male accessory glands3 10 of 4 1.30None
Virgin spermatheca1 00 of 4 0.46None
Mated spermatheca2 00 of 4 0.92None
Adult carcass5 10 of 4 1.90None
Larval CNS3 11 of 4 1.38None
Larval Salivary gland1 00 of 4 0.44None
Larval midgut5 10 of 4 2.07None
Larval tubule3 10 of 4 1.20None
Larval hindgut3 00 of 4 1.10None
Larval fat body2 00 of 4 0.90None
Larval trachea1 10 of 4 0.59None
Larval carcass7 01 of 4 2.52Up
S2 cells (growing)3 11 of 4 1.27None
Whole fly2 10 of 4



(CG33543):

Annotation Number : CG15355
Flybase ID : FBgn0053543
Gbrowse : chr2L:1997773-1998934 (-) // 100.0 //
Probeset : 1638097_at
Accessions : protein= NP_001014458;, nucleotide= NM_001014458;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0053543.
VDRC has 5 RNAi stocks for FBgn0053543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain195 54 of 416.00Up
Head35 23 of 4 2.90Up
Eye3 10 of 4 0.32Down
Thoracicoabdominal ganglion230 74 of 418.90Up
Salivary gland10 20 of 4 0.82None
Crop3 10 of 4 0.30Down
Midgut14 10 of 4 1.20None
Tubule6 00 of 4 0.60Down
Hindgut3 20 of 4 0.30Down
Heart2 10 of 4 0.21Down
Fat body3 30 of 4 0.27Down
Ovary6 10 of 4 0.50Down
Testis9 01 of 4 0.80None
Male accessory glands6 30 of 4 0.50None
Virgin spermatheca2 10 of 4 0.16Down
Mated spermatheca2 10 of 4 0.18Down
Adult carcass5 20 of 4 0.40Down
Larval CNS46 64 of 4 3.84Up
Larval Salivary gland1 00 of 4 0.12Down
Larval midgut7 20 of 4 0.60None
Larval tubule8 20 of 4 0.70None
Larval hindgut3 10 of 4 0.30Down
Larval fat body5 20 of 4 0.40None
Larval trachea2 10 of 4 0.19Down
Larval carcass2 00 of 4 0.22Down
S2 cells (growing)6 00 of 4 0.56Down
Whole fly12 10 of 4

Looking for FBgn0053543. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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