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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053547 through 18771 annotations produced 3 hits



Rim (Rim):

Annotation Number : CG7301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053547
Gbrowse : chr3R:13733669-13734462 (-) // 100.0 //
Probeset : 1638777_at
Accessions : protein= NP_001014630;, nucleotide= NM_001014630;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005083 // small GTPase regulator activity // inferred from sequence or structural similarity /// 0005515 // protein bin
FlyMine data for FBgn0053547.
TRiP has 1 RNAi stocks for FBgn0053547 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 54 of 444.60Up
Head4 ± 10 of 4 3.30None
Eye8 ± 01 of 4 7.00Up
Thoracicoabdominal ganglion35 ± 44 of 428.10Up
Salivary gland2 ± 00 of 4 2.25None
Crop3 ± 10 of 4 2.90None
Midgut2 ± 00 of 4 2.20None
Tubule4 ± 00 of 4 3.30Up
Hindgut2 ± 10 of 4 1.70None
Heart2 ± 10 of 4 1.75None
Fat body1 ± 00 of 4 1.08None
Ovary2 ± 10 of 4 1.90None
Testis5 ± 00 of 4 4.10Up
Male accessory glands1 ± 00 of 4 1.30None
Virgin spermatheca2 ± 10 of 4 2.25None
Mated spermatheca4 ± 10 of 4 3.45None
Adult carcass4 ± 10 of 4 3.60None
Larval CNS9 ± 40 of 4 7.55Up
Larval Salivary gland6 ± 20 of 4 4.88None
Larval midgut3 ± 10 of 4 2.71None
Larval tubule3 ± 10 of 4 2.50None
Larval hindgut4 ± 10 of 4 3.12None
Larval fat body2 ± 00 of 4 2.20None
Larval trachea3 ± 20 of 4 2.55None
Larval carcass1 ± 00 of 4 1.43None
S2 cells (growing)1 ± 00 of 4 1.14None
Whole fly1 ± 00 of 4



Rim (Rim):

Annotation Number : CG7305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053547
Gbrowse : chr3R:13730668-13732120 (-) // 98.48 //
Probeset : 1623169_at
Accessions : protein= NP_001014630;, nucleotide= NM_001014630;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005083 // small GTPase regulator activity // inferred from sequence or structural similarity /// 0005515 // protein bin
FlyMine data for FBgn0053547.
TRiP has 1 RNAi stocks for FBgn0053547 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 ± 114 of 418.10Up
Head19 ± 10 of 4 1.50None
Eye13 ± 12 of 4 1.05None
Thoracicoabdominal ganglion129 ± 64 of 410.10Up
Salivary gland32 ± 34 of 4 2.51Up
Crop15 ± 20 of 4 1.20None
Midgut13 ± 20 of 4 1.10None
Tubule5 ± 00 of 4 0.50Down
Hindgut12 ± 30 of 4 1.00None
Heart7 ± 10 of 4 0.58None
Fat body18 ± 51 of 4 1.42None
Ovary5 ± 10 of 4 0.50None
Testis8 ± 22 of 4 0.60None
Male accessory glands15 ± 30 of 4 1.20None
Virgin spermatheca15 ± 10 of 4 1.20None
Mated spermatheca11 ± 20 of 4 0.93None
Adult carcass16 ± 20 of 4 1.30None
Larval CNS38 ± 24 of 4 3.03Up
Larval Salivary gland15 ± 30 of 4 1.18None
Larval midgut18 ± 21 of 4 1.41None
Larval tubule6 ± 20 of 4 0.50None
Larval hindgut17 ± 10 of 4 1.33None
Larval fat body11 ± 20 of 4 0.90None
Larval trachea9 ± 20 of 4 0.73None
Larval carcass16 ± 20 of 4 1.26None
S2 cells (growing)11 ± 11 of 4 0.94None
Whole fly12 ± 21 of 4



Rim (Rim):

Annotation Number : CG7321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053547
Gbrowse : chr3R:13700762-13721317 (-) // 99.83 //
Probeset : 1639490_at
Accessions : protein= NP_001014630;, nucleotide= NM_001014630;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005083 // small GTPase regulator activity // inferred from sequence or structural similarity /// 0005515 // protein bin
FlyMine data for FBgn0053547.
Homophila reports that CG7321 is a close match (2e-46) to human gene CORD7;KIAA0340;RIM;RIM1;RIMS1 (NP_055804), a gene associated with Cone-rod dystrophy 7, 603649 (3).
TRiP has 1 RNAi stocks for FBgn0053547 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain626 ± 224 of 428.70Up
Head75 ± 114 of 4 3.50Up
Eye217 ± 304 of 4 9.96Up
Thoracicoabdominal ganglion404 ± 164 of 418.50Up
Salivary gland15 ± 31 of 4 0.69None
Crop4 ± 20 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule7 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.20Down
Heart3 ± 11 of 4 0.17Down
Fat body25 ± 73 of 4 1.17None
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands9 ± 30 of 4 0.50Down
Virgin spermatheca38 ± 64 of 4 1.74None
Mated spermatheca40 ± 113 of 4 1.84None
Adult carcass16 ± 20 of 4 0.80None
Larval CNS266 ± 284 of 412.19Up
Larval Salivary gland7 ± 20 of 4 0.32Down
Larval midgut2 ± 10 of 4 0.13Down
Larval tubule3 ± 20 of 4 0.10Down
Larval hindgut7 ± 31 of 4 0.35Down
Larval fat body8 ± 20 of 4 0.40Down
Larval trachea4 ± 61 of 4 0.21Down
Larval carcass3 ± 10 of 4 0.16Down
S2 cells (growing)2 ± 00 of 4 0.09Down
Whole fly21 ± 34 of 4

Looking for FBgn0053547. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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