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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053548 through 18771 annotations produced 2 hits



msta (msta):

Annotation Number : CG32800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053548
Gbrowse : chrX:2099882-2102711 (-) // 100.0 //
Probeset : 1637662_at
Accessions : protein= NP_001014717; /// NP_001014718;, nucleotide= NM_001014717; /// NM_001014718;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0016564 // transcription repressor activity // inferred from direct assay
FlyMine data for FBgn0053548.
VDRC has 1 RNAi stocks for FBgn0053548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 14 of 4 0.40Down
Head665 844 of 4 9.00Up
Eye2321 1314 of 431.51Up
Thoracicoabdominal ganglion11 13 of 4 0.20Down
Salivary gland17 31 of 4 0.24Down
Crop104 34 of 4 1.40Up
Midgut16 12 of 4 0.20Down
Tubule11 13 of 4 0.10Down
Hindgut37 24 of 4 0.50Down
Heart85 44 of 4 1.15None
Fat body49 164 of 4 0.67None
Ovary5 11 of 4 0.10Down
Testis10 13 of 4 0.10Down
Male accessory glands12 00 of 4 0.20Down
Virgin spermatheca4 01 of 4 0.06Down
Mated spermatheca6 11 of 4 0.08Down
Adult carcass86 64 of 4 1.20None
Larval CNS12 54 of 4 0.17Down
Larval Salivary gland3 10 of 4 0.05Down
Larval midgut10 21 of 4 0.14Down
Larval tubule6 21 of 4 0.10Down
Larval hindgut104 54 of 4 1.41Up
Larval fat body10 10 of 4 0.10Down
Larval trachea40 623 of 4 0.55None
Larval carcass215 134 of 4 2.93Up
S2 cells (growing)4 10 of 4 0.06Down
Whole fly73 74 of 4



msta (msta):

Annotation Number : CG32799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053548
Gbrowse : chrX:2106878-2107808 (-) // 100.0 //
Probeset : 1632861_at
Accessions : protein= NP_001014717; /// NP_001014718;, nucleotide= NM_001014717; /// NM_001014718;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0016564 // transcription repressor activity // inferred from direct assay
FlyMine data for FBgn0053548.
VDRC has 1 RNAi stocks for FBgn0053548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head1 00 of 4 0.40Down
Eye1 00 of 4 0.33Down
Thoracicoabdominal ganglion2 10 of 4 0.80None
Salivary gland2 10 of 4 0.76None
Crop83 34 of 425.30Up
Midgut7 10 of 4 2.10None
Tubule3 00 of 4 1.10None
Hindgut22 24 of 4 6.70Up
Heart8 22 of 4 2.61None
Fat body4 20 of 4 1.21None
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.40Down
Male accessory glands7 10 of 4 2.10None
Virgin spermatheca0 00 of 4 0.24Down
Mated spermatheca1 00 of 4 0.29Down
Adult carcass4 10 of 4 1.20None
Larval CNS0 00 of 4 0.16Down
Larval Salivary gland2 10 of 4 0.72None
Larval midgut4 11 of 4 1.30None
Larval tubule4 00 of 4 1.30None
Larval hindgut42 44 of 412.74Up
Larval fat body1 00 of 4 0.40Down
Larval trachea2 20 of 4 0.79None
Larval carcass21 52 of 4 6.66Up
S2 cells (growing)2 10 of 4 0.75None
Whole fly3 00 of 4

Looking for FBgn0053548. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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