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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053554 through 18771 annotations produced 2 hits



Nipped (Nipped-A):

Annotation Number : CT29602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053554
Gbrowse : chr2R:1125748-1138471 (-) // 100.0 //
Probeset : 1624771_at
Accessions : protein= NP_001014499; /// NP_001097192;, nucleotide= NM_001014499; /// NM_001103722;
Pathway : engulfment // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotati
Interpro : 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0000124 // SAGA complex // non-traceable
FlyMine data for FBgn0053554.
TRiP has 3 RNAi stocks for FBgn0053554 available for purchase.
VDRC has 5 RNAi stocks for FBgn0053554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 02 of 4 2.30Up
Head3 ± 10 of 4 0.90None
Eye1 ± 00 of 4 0.34None
Thoracicoabdominal ganglion4 ± 20 of 4 1.20None
Salivary gland6 ± 20 of 4 1.75None
Crop3 ± 00 of 4 0.80None
Midgut6 ± 00 of 4 1.60None
Tubule2 ± 00 of 4 0.70None
Hindgut4 ± 01 of 4 1.20None
Heart4 ± 00 of 4 1.05None
Fat body5 ± 10 of 4 1.26None
Ovary3 ± 10 of 4 1.00None
Testis3 ± 01 of 4 0.80None
Male accessory glands10 ± 11 of 4 2.60Up
Virgin spermatheca3 ± 10 of 4 0.90None
Mated spermatheca3 ± 00 of 4 0.88None
Adult carcass3 ± 10 of 4 0.80None
Larval CNS5 ± 12 of 4 1.52None
Larval Salivary gland3 ± 20 of 4 0.82None
Larval midgut5 ± 12 of 4 1.41None
Larval tubule3 ± 10 of 4 1.00None
Larval hindgut2 ± 01 of 4 0.61None
Larval fat body9 ± 20 of 4 2.30None
Larval trachea4 ± 21 of 4 1.14None
Larval carcass3 ± 11 of 4 0.89None
S2 cells (growing)4 ± 10 of 4 1.18None
Whole fly3 ± 00 of 4



Nipped (Nipped-A):

Annotation Number : CG2905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053554
Gbrowse : chr2R:1065505-1099933 (-) // 100.0 //
Probeset : 1625263_at
Accessions : protein= NP_001014499; /// NP_001097192;, nucleotide= NM_001014499; /// NM_001103722;
Pathway : engulfment // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotati
Interpro : 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0000124 // SAGA complex // non-traceable
FlyMine data for FBgn0053554.
Homophila reports that CG2905 is a close match (5e-12) to human gene ATR;FRP1;SCKL (NP_001175), a gene associated with Seckel syndrome 1, 210600 (3).
TRiP has 3 RNAi stocks for FBgn0053554 available for purchase.
VDRC has 5 RNAi stocks for FBgn0053554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain388 ± 74 of 4 1.90Up
Head144 ± 74 of 4 0.70None
Eye140 ± 164 of 4 0.70None
Thoracicoabdominal ganglion325 ± 14 of 4 1.60Up
Salivary gland160 ± 204 of 4 0.80None
Crop159 ± 74 of 4 0.80None
Midgut97 ± 34 of 4 0.50Down
Tubule111 ± 24 of 4 0.60Down
Hindgut140 ± 94 of 4 0.70None
Heart78 ± 24 of 4 0.39Down
Fat body73 ± 94 of 4 0.36Down
Ovary499 ± 124 of 4 2.50Up
Testis66 ± 14 of 4 0.30Down
Male accessory glands229 ± 124 of 4 1.10None
Virgin spermatheca83 ± 54 of 4 0.42Down
Mated spermatheca102 ± 114 of 4 0.51Down
Adult carcass90 ± 54 of 4 0.50Down
Larval CNS655 ± 194 of 4 3.26Up
Larval Salivary gland199 ± 64 of 4 0.99None
Larval midgut94 ± 54 of 4 0.47Down
Larval tubule179 ± 14 of 4 0.90None
Larval hindgut153 ± 14 of 4 0.77None
Larval fat body111 ± 64 of 4 0.60Down
Larval trachea408 ± 154 of 4 2.03Up
Larval carcass170 ± 34 of 4 0.85None
S2 cells (growing)469 ± 94 of 4 2.34Up
Whole fly200 ± 204 of 4

Looking for FBgn0053554. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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