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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053631 through 18771 annotations produced 1 hits



(CG33631):

Annotation Number : CT31934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053631
Gbrowse : chr3R:5888345-5890367 (+) // 100.0 //
Probeset : 1630481_at
Accessions : protein= NP_001027167;, nucleotide= NM_001031996;
FlyMine data for FBgn0053631.
VDRC has 1 RNAi stocks for FBgn0053631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.00None
Head6 12 of 4 1.10None
Eye3 00 of 4 0.51Down
Thoracicoabdominal ganglion7 11 of 4 1.20None
Salivary gland12 20 of 4 2.12Up
Crop2 00 of 4 0.40Down
Midgut6 10 of 4 1.00None
Tubule8 00 of 4 1.40Up
Hindgut7 10 of 4 1.20None
Heart7 00 of 4 1.16None
Fat body15 43 of 4 2.58Up
Ovary2 00 of 4 0.50Down
Testis1 00 of 4 0.20Down
Male accessory glands11 20 of 4 1.90None
Virgin spermatheca12 02 of 4 2.09Up
Mated spermatheca14 13 of 4 2.44Up
Adult carcass14 20 of 4 2.40Up
Larval CNS7 32 of 4 1.30None
Larval Salivary gland12 21 of 4 2.11None
Larval midgut10 10 of 4 1.73Up
Larval tubule10 12 of 4 1.70None
Larval hindgut9 00 of 4 1.51Up
Larval fat body4 20 of 4 0.70None
Larval trachea3 10 of 4 0.55Down
Larval carcass4 01 of 4 0.72None
S2 cells (growing)4 00 of 4 0.70None
Whole fly6 00 of 4

Looking for FBgn0053631. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime