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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053635 through 18771 annotations produced 1 hits



(CG33635):

Annotation Number : HDC00027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053635
Gbrowse : chr2L:157943-158603 (-) // 100.0 //
Probeset : 1627824_at
Accessions : protein= NP_001027215;, nucleotide= NM_001032044;
Pathway : 0000139 // Golgi membrane // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0053635.
VDRC has 2 RNAi stocks for FBgn0053635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 24 of 4 1.40Up
Head80 44 of 4 1.10None
Eye156 124 of 4 2.20Up
Thoracicoabdominal ganglion117 44 of 4 1.70Up
Salivary gland160 44 of 4 2.25Up
Crop50 34 of 4 0.70Down
Midgut129 14 of 4 1.80Up
Tubule43 24 of 4 0.60Down
Hindgut62 14 of 4 0.90Down
Heart77 24 of 4 1.09None
Fat body81 54 of 4 1.15Up
Ovary145 24 of 4 2.00Up
Testis32 34 of 4 0.50Down
Male accessory glands261 134 of 4 3.70Up
Virgin spermatheca74 24 of 4 1.05None
Mated spermatheca86 74 of 4 1.21None
Adult carcass48 44 of 4 0.70Down
Larval CNS85 34 of 4 1.20Up
Larval Salivary gland305 94 of 4 4.29Up
Larval midgut123 24 of 4 1.73Up
Larval tubule91 24 of 4 1.30Up
Larval hindgut74 64 of 4 1.05None
Larval fat body110 84 of 4 1.60Up
Larval trachea107 94 of 4 1.50Up
Larval carcass80 64 of 4 1.13None
S2 cells (growing)250 74 of 4 3.52Up
Whole fly71 24 of 4

Looking for FBgn0053635. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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