FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053639 through 18771 annotations produced 2 hits

(CG33639):

Annotation Number : CG16958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053639
Gbrowse : chrX:18111373-18114067 (-) // 100.0 //
Probeset : 1632926_at
Accessions : protein= NP_001027070;, nucleotide= NM_001031899;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0053639.
TRiP has 2 RNAi stocks for FBgn0053639 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053639 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	4 of 4	5.90	Up
Head	4 ± 1	0 of 4	2.20	None
Eye	2 ± 0	0 of 4	1.10	None
Thoracicoabdominal ganglion	6 ± 2	0 of 4	2.90	None
Salivary gland	3 ± 1	0 of 4	1.71	None
Crop	2 ± 1	0 of 4	1.30	None
Midgut	5 ± 1	0 of 4	2.40	None
Tubule	2 ± 0	0 of 4	1.00	None
Hindgut	2 ± 0	0 of 4	1.00	None
Heart	1 ± 0	0 of 4	0.49	None
Fat body	6 ± 3	0 of 4	2.97	None
Ovary	2 ± 0	0 of 4	1.10	None
Testis	4 ± 0	0 of 4	2.10	None
Male accessory glands	2 ± 1	0 of 4	1.10	None
Virgin spermatheca	4 ± 1	0 of 4	2.14	None
Mated spermatheca	5 ± 1	0 of 4	2.40	None
Adult carcass	3 ± 1	0 of 4	1.80	None
Larval CNS	4 ± 1	1 of 4	2.10	None
Larval Salivary gland	2 ± 0	0 of 4	0.95	None
Larval midgut	6 ± 0	0 of 4	2.92	Up
Larval tubule	1 ± 0	0 of 4	0.70	None
Larval hindgut	1 ± 0	0 of 4	0.90	None
Larval fat body	3 ± 2	0 of 4	1.70	None
Larval trachea	2 ± 2	0 of 4	1.30	None
Larval carcass	1 ± 0	0 of 4	0.47	None
S2 cells (growing)	1 ± 0	0 of 4	0.80	None
Whole fly	2 ± 1	0 of 4

chrX:18107106-18108927 (-) // 100.0 // ():

Annotation Number : CG5936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638954_at
Accessions : protein= , nucleotide= NP_001027070;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	2.90	Up
Head	7 ± 0	0 of 4	1.20	None
Eye	6 ± 2	0 of 4	1.05	None
Thoracicoabdominal ganglion	15 ± 2	0 of 4	2.40	Up
Salivary gland	12 ± 5	0 of 4	1.92	None
Crop	10 ± 2	0 of 4	1.60	None
Midgut	9 ± 3	0 of 4	1.40	None
Tubule	10 ± 1	0 of 4	1.70	Up
Hindgut	8 ± 0	0 of 4	1.20	None
Heart	8 ± 2	1 of 4	1.35	None
Fat body	10 ± 1	0 of 4	1.59	None
Ovary	8 ± 1	1 of 4	1.30	None
Testis	5 ± 0	0 of 4	0.80	None
Male accessory glands	12 ± 1	0 of 4	1.80	None
Virgin spermatheca	10 ± 2	0 of 4	1.65	None
Mated spermatheca	10 ± 1	0 of 4	1.57	None
Adult carcass	14 ± 3	0 of 4	2.30	None
Larval CNS	9 ± 1	1 of 4	1.42	None
Larval Salivary gland	8 ± 1	0 of 4	1.33	None
Larval midgut	7 ± 1	0 of 4	1.15	None
Larval tubule	7 ± 2	0 of 4	1.10	None
Larval hindgut	8 ± 1	0 of 4	1.30	None
Larval fat body	8 ± 3	0 of 4	1.40	None
Larval trachea	3 ± 3	0 of 4	0.54	None
Larval carcass	13 ± 2	0 of 4	2.14	Up
S2 cells (growing)	5 ± 1	0 of 4	0.78	None
Whole fly	6 ± 1	0 of 4

Looking for FBgn0053639. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720