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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053703 through 18771 annotations produced 1 hits



(CG33703):

Annotation Number : Stencil:3L:9471488:9469536:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053703
Gbrowse : chr3L:9505107-9507059 (-) // 100.0 //
Probeset : 1639627_at
Accessions : protein= NP_001027119;, nucleotide= NM_001031948;
FlyMine data for FBgn0053703.
VDRC has 1 RNAi stocks for FBgn0053703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.80None
Head1 00 of 4 1.10None
Eye1 00 of 4 1.09None
Thoracicoabdominal ganglion1 00 of 4 0.90None
Salivary gland7 10 of 4 5.22None
Crop2 10 of 4 1.50None
Midgut3 10 of 4 2.20None
Tubule1 00 of 4 1.30None
Hindgut1 10 of 4 1.40None
Heart3 10 of 4 2.63None
Fat body7 30 of 4 5.33Up
Ovary1 00 of 4 1.30None
Testis0 00 of 4 0.20Down
Male accessory glands7 10 of 4 5.50Up
Virgin spermatheca1 00 of 4 0.96None
Mated spermatheca2 10 of 4 1.57None
Adult carcass0 00 of 4 0.60None
Larval CNS0 00 of 4 0.46None
Larval Salivary gland2 10 of 4 1.74None
Larval midgut1 00 of 4 1.31None
Larval tubule1 00 of 4 1.00None
Larval hindgut1 00 of 4 0.81None
Larval fat body1 00 of 4 1.20None
Larval trachea1 10 of 4 1.33None
Larval carcass0 00 of 4 0.57None
S2 cells (growing)0 00 of 4 0.35None
Whole fly1 00 of 4

Looking for FBgn0053703. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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