FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053725 through 18771 annotations produced 1 hits

(CG33725):

Annotation Number : Stencil:3L:12440155:12443944:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053725
Gbrowse : chr3L:12475708-12479497 (+) // 100.0 //
Probeset : 1638617_at
Accessions : protein= NP_001097594;, nucleotide= NM_001104124;
FlyMine data for FBgn0053725.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	2.40	None
Head	2 ± 0	0 of 4	2.50	None
Eye	3 ± 1	1 of 4	4.70	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	5.40	None
Salivary gland	1 ± 0	0 of 4	2.15	None
Crop	4 ± 1	0 of 4	5.20	None
Midgut	3 ± 1	0 of 4	3.70	None
Tubule	2 ± 0	0 of 4	3.50	Up
Hindgut	3 ± 0	0 of 4	4.30	Up
Heart	2 ± 0	0 of 4	3.15	None
Fat body	9 ± 2	1 of 4	10.97	Up
Ovary	0 ± 0	0 of 4	0.80	None
Testis	5 ± 0	0 of 4	6.40	Up
Male accessory glands	5 ± 1	0 of 4	7.20	Up
Virgin spermatheca	5 ± 1	1 of 4	6.97	None
Mated spermatheca	6 ± 1	0 of 4	7.58	Up
Adult carcass	6 ± 1	0 of 4	8.00	Up
Larval CNS	4 ± 1	1 of 4	5.82	Up
Larval Salivary gland	6 ± 2	0 of 4	7.58	None
Larval midgut	1 ± 1	0 of 4	1.73	None
Larval tubule	3 ± 0	0 of 4	4.50	None
Larval hindgut	2 ± 0	0 of 4	3.36	None
Larval fat body	3 ± 1	0 of 4	4.70	None
Larval trachea	0 ± 0	0 of 4	0.91	None
Larval carcass	0 ± 0	0 of 4	0.88	None
S2 cells (growing)	2 ± 1	0 of 4	3.06	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0053725. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720