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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053758 through 18771 annotations produced 1 hits



(CG33758):

Annotation Number : Stencil:2R:4514687:4514040:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053758
Gbrowse : chr2R:5340913-5341560 (-) // 100.0 //
Probeset : 1641172_at
Accessions : protein= NP_001027397;, nucleotide= NM_001032226;
FlyMine data for FBgn0053758.
VDRC has 1 RNAi stocks for FBgn0053758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.80None
Head3 ± 10 of 4 2.40None
Eye1 ± 00 of 4 1.06None
Thoracicoabdominal ganglion2 ± 00 of 4 1.60None
Salivary gland9 ± 30 of 4 6.15None
Crop3 ± 00 of 4 2.10None
Midgut2 ± 00 of 4 1.80None
Tubule2 ± 00 of 4 1.60None
Hindgut2 ± 00 of 4 1.60None
Heart3 ± 10 of 4 2.08None
Fat body4 ± 21 of 4 2.94None
Ovary1 ± 00 of 4 0.90None
Testis2 ± 00 of 4 1.40None
Male accessory glands9 ± 01 of 4 6.10Up
Virgin spermatheca2 ± 00 of 4 1.68None
Mated spermatheca4 ± 11 of 4 2.95None
Adult carcass5 ± 30 of 4 3.20None
Larval CNS1 ± 10 of 4 0.76None
Larval Salivary gland3 ± 00 of 4 2.13None
Larval midgut0 ± 00 of 4 0.29None
Larval tubule4 ± 11 of 4 3.00None
Larval hindgut1 ± 00 of 4 0.84None
Larval fat body4 ± 10 of 4 2.70None
Larval trachea2 ± 00 of 4 1.82None
Larval carcass2 ± 00 of 4 1.56None
S2 cells (growing)2 ± 00 of 4 1.32None
Whole fly1 ± 00 of 4

Looking for FBgn0053758. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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