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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053775 through 18771 annotations produced 1 hits



(CG33775):

Annotation Number : Stencil:2R:7629614:7629144:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053775
Gbrowse : chr2R:8451936-8452406 (-) // 100.0 //
Probeset : 1638543_at
Accessions : protein= NP_001027410;, nucleotide= NM_001032239;
FlyMine data for FBgn0053775.
VDRC has 1 RNAi stocks for FBgn0053775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 2.00None
Head4 ± 11 of 4 2.00None
Eye3 ± 00 of 4 1.56None
Thoracicoabdominal ganglion3 ± 10 of 4 1.90None
Salivary gland16 ± 20 of 4 7.87Up
Crop2 ± 10 of 4 1.40None
Midgut8 ± 21 of 4 3.90None
Tubule3 ± 00 of 4 1.80None
Hindgut6 ± 10 of 4 3.20None
Heart3 ± 00 of 4 1.80None
Fat body5 ± 21 of 4 2.88Up
Ovary1 ± 00 of 4 0.90None
Testis2 ± 00 of 4 1.10None
Male accessory glands4 ± 20 of 4 2.40None
Virgin spermatheca5 ± 00 of 4 2.41Up
Mated spermatheca4 ± 10 of 4 2.12None
Adult carcass7 ± 20 of 4 3.50None
Larval CNS0 ± 00 of 4 0.43None
Larval Salivary gland5 ± 10 of 4 2.44None
Larval midgut5 ± 10 of 4 2.67Up
Larval tubule4 ± 10 of 4 2.00None
Larval hindgut6 ± 10 of 4 3.06None
Larval fat body6 ± 20 of 4 3.30None
Larval trachea2 ± 10 of 4 1.38None
Larval carcass2 ± 00 of 4 1.37None
S2 cells (growing)1 ± 00 of 4 0.78None
Whole fly2 ± 00 of 4

Looking for FBgn0053775. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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