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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053795 through 18771 annotations produced 1 hits



/// (CG33795 /// CG33796):

Annotation Number : Stencil:3L:16120259:16113477:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053795 /// FBgn0053796
Gbrowse : chr3L:16157698-16164480 (-) // 100.0 //
Probeset : 1629717_at
Accessions : protein= NP_001027128; /// NP_001027129;, nucleotide= NM_001031957; /// NM_001031958;
FlyMine data for FBgn0053795 /// FBgn0053796.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.80None
Head7 10 of 4 0.90None
Eye6 00 of 4 0.73None
Thoracicoabdominal ganglion8 21 of 4 1.10None
Salivary gland12 30 of 4 1.57None
Crop6 10 of 4 0.80None
Midgut6 20 of 4 0.70None
Tubule8 00 of 4 1.10None
Hindgut9 10 of 4 1.20None
Heart4 10 of 4 0.60None
Fat body15 42 of 4 1.92Up
Ovary8 01 of 4 1.00None
Testis4 10 of 4 0.50None
Male accessory glands11 21 of 4 1.40None
Virgin spermatheca12 10 of 4 1.52None
Mated spermatheca16 00 of 4 1.99Up
Adult carcass15 30 of 4 1.90None
Larval CNS7 21 of 4 0.86None
Larval Salivary gland8 11 of 4 1.08None
Larval midgut4 10 of 4 0.54None
Larval tubule9 10 of 4 1.20None
Larval hindgut5 00 of 4 0.64Down
Larval fat body12 11 of 4 1.60Up
Larval trachea9 11 of 4 1.12None
Larval carcass10 20 of 4 1.24None
S2 cells (growing)8 11 of 4 1.06None
Whole fly8 01 of 4

Looking for FBgn0053795. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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