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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053838 through 18771 annotations produced 1 hits



His2A:CG31618 /// His2A:CG33808 /// His2A:CG33814 /// His2A:CG33817 /// His2A:CG33820 /// His2A:CG33823 /// His2A:CG33826 /// His2A:CG33829 /// His2A:CG33832 /// His2A:CG33835 /// His2A:CG33838 /// His2A:CG33841 /// His2A:CG33844 /// His2A:CG33847 /// His2A:CG33850 /// His2A:CG33853 /// His2A:CG33856 /// His2A:CG33859 /// His2A:CG33862 /// His2A:CG33865 (His2A:CG31618 /// His2A:CG33808 /// His2A:CG33814 /// His2A:CG33817 /// His2A:CG33820 /// His2A:CG33823 /// His2A:CG33826 /// His2A:CG33829 /// His2A:CG33832 /// His2A:CG33835 /// His2A:CG33838 /// His2A:CG33841 /// His2A:CG33844 /// His2A:CG33847 /// His2A:CG33850 /// His2A:CG33853 /// His2A:CG33856 /// His2A:CG33859 /// His2A:CG33862 /// His2A:CG33865):

Annotation Number : CG31618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051618 /// FBgn0053802 /// FBgn0053805 /// FBgn0053808 /// FBgn0053811 /// FBgn0053814 /// FBgn0053817 /// FBgn0053820 /// FBgn0053823 /// FBgn0053826 /// FBgn0053829 /// FBgn0053832 /// FBgn0053835 /// FBgn0053838 /// FBgn0053841 /// FBgn0053844 /// FBgn0053847 /// FBgn0053850 /// FBgn0053853 /// FBgn0053856 /// FBgn0053859 /// FBgn0053862 /// FBgn0053865
Gbrowse : chrUextra:14774322-14774904 (+) // 99.83 // /// chrUextra:16740134-16740716 (+) // 99.83 // /// chrUextra:11303512-11304094 (+) // 99.66 // /// chr2L:21423736-21424318 (+) // 100.0 // /// chr2L:21452933-21453515 (+) // 100.0 // /// chr2L:21457994-21458576 (+) // 100.0 // /// chr2L:21463054-21463636 (+) // 100.0 // /// chr2L:21468097-21468679 (+) // 100.0 // /// chr2L:21473140-21473722 (+) // 100.0 // /// chr2L:21478183-21478765 (+) // 100.0 // /// chr2L:21433844-21434426 (+) // 99.83 // /// chr2L:21483226-21483808 (+) // 99.83 // /// chrUextra:9494222-9494804 (-) // 99.83 // /// chrUextra:11006288-11006870 (-) // 99.83 // /// chrUextra:10054344-10054926 (-) // 99.66 // /// chrUextra:10905555-10906137 (-) // 99.66 // /// chrUextra:17688658-17689240 (-) // 99.66 // /// chrUextra:14306270-14734225 (-) // 99.83 // /// chrUextra:3438333-3902650 (-) // 99.83 // /// chrUextra:9003415-9540826 (-) // 99.83 //
Probeset : 1625925_at
Accessions : protein= NP_001027292; /// NP_001027301; /// NP_001027306; /// NP_001027311; /// NP_001027316; /// NP_001027321; /// NP_001027326; /// NP_001027331; /// NP_001027336; /// NP_001027341; /// NP_001027346; /// NP_001027351; /// NP_001027356; /// NP_001027361; /// NP_001027366; /// NP_001027371; /// NP_001027376; /// NP_001027381; /// NP_001027386; /// NP_724343;, nucleotide= NM_001032121; /// NM_001032130; /// NM_001032135; /// NM_001032140; /// NM_001032145; /// NM_001032150; /// NM_001032155; /// NM_001032160; /// NM_001032165; /// NM_001032170; /// NM_001032175; /// NM_001032180; /// NM_001032185; /// NM_001032190; /// NM_001032195; /// NM_001032200; /// NM_001032205; /// NM_001032210; /// NM_001032215; /// NM_165382;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from elec
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0051618 /// FBgn0053802 /// FBgn0053805 /// FBgn0053808 /// FBgn0053811 /// FBgn0053814 /// FBgn0053817 /// FBgn0053820 /// FBgn0053823 /// FBgn0053826 /// FBgn0053829 /// FBgn0053832 /// FBgn0053835 /// FBgn0053838 /// FBgn0053841 /// FBgn0053844 /// FBgn0053847 /// FBgn0053850 /// FBgn0053853 /// FBgn0053856 /// FBgn0053859 /// FBgn0053862 /// FBgn0053865.
BioGrid reports that CG31618 interacts with CG5149 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 24 of 4 0.00Down
Head11 23 of 4 0.00Down
Eye5 11 of 4 0.00Down
Thoracicoabdominal ganglion10 11 of 4 0.00Down
Salivary gland28 14 of 4 0.02Down
Crop19 14 of 4 0.00Down
Midgut14 10 of 4 0.00Down
Tubule32 250 of 4 0.00Down
Hindgut18 13 of 4 0.00Down
Heart7 03 of 4 0.01Down
Fat body60 244 of 4 0.04Down
Ovary2381 664 of 4 1.70Up
Testis333 184 of 4 0.20Down
Male accessory glands20 52 of 4 0.00Down
Virgin spermatheca55 64 of 4 0.04Down
Mated spermatheca28 74 of 4 0.02Down
Adult carcass35 93 of 4 0.00Down
Larval CNS60 114 of 4 0.04Down
Larval Salivary gland56 64 of 4 0.04Down
Larval midgut25 43 of 4 0.02Down
Larval tubule9 22 of 4 0.00Down
Larval hindgut20 24 of 4 0.01Down
Larval fat body78 274 of 4 0.10Down
Larval trachea11 32 of 4 0.01Down
Larval carcass11 11 of 4 0.01Down
S2 cells (growing)70 34 of 4 0.05Down
Whole fly1398 1814 of 4

Looking for FBgn0053838. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime