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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053843 through 18771 annotations produced 2 hits



His1:CG31617 /// His1:CG33801 /// His1:CG33804 /// His1:CG33807 /// His1:CG33810 /// His1:CG33813 /// His1:CG33816 /// His1:CG33819 /// His1:CG33822 /// His1:CG33825 /// His1:CG33828 /// His1:CG33831 /// His1:CG33834 /// His1:CG33837 /// His1:CG33840 /// His1:CG33843 /// His1:CG33846 /// His1:CG33849 /// His1:CG33852 /// His1:CG33855 /// His1:CG33858 /// His1:CG33861 /// His1:CG33864 (His1:CG31617 /// His1:CG33801 /// His1:CG33804 /// His1:CG33807 /// His1:CG33810 /// His1:CG33813 /// His1:CG33816 /// His1:CG33819 /// His1:CG33822 /// His1:CG33825 /// His1:CG33828 /// His1:CG33831 /// His1:CG33834 /// His1:CG33837 /// His1:CG33840 /// His1:CG33843 /// His1:CG33846 /// His1:CG33849 /// His1:CG33852 /// His1:CG33855 /// His1:CG33858 /// His1:CG33861 /// His1:CG33864):

Annotation Number : CG31617
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051617 /// FBgn0053801 /// FBgn0053804 /// FBgn0053807 /// FBgn0053810 /// FBgn0053813 /// FBgn0053816 /// FBgn0053819 /// FBgn0053822 /// FBgn0053825 /// FBgn0053828 /// FBgn0053831 /// FBgn0053834 /// FBgn0053837 /// FBgn0053840 /// FBgn0053843 /// FBgn0053846 /// FBgn0053849 /// FBgn0053852 /// FBgn0053855 /// FBgn0053858 /// FBgn0053861 /// FBgn0053864
Gbrowse : chrUextra:10958515-11389945 (+) // 100.0 // /// chrUextra:17519559-17974119 (+) // 99.89 // /// chrUextra:10798897-11720181 (+) // 99.89 // /// chr2L:21456232-21457110 (+) // 100.0 // /// chr2L:21421974-21422852 (+) // 99.89 // /// chr2L:21437130-21438008 (+) // 99.89 // /// chr2L:21451171-21452049 (+) // 99.89 // /// chr2L:21461292-21462170 (+) // 99.89 // /// chr2L:21466335-21467213 (+) // 99.89 // /// chr2L:21471378-21472256 (+) // 99.89 // /// chr2L:21476421-21477299 (+) // 99.89 // /// chr2L:21481464-21482342 (+) // 99.89 // /// chr2L:21491660-21492538 (+) // 99.89 // /// chr2L:21496705-21497583 (+) // 99.89 // /// chr2L:21501752-21502630 (+) // 99.89 // /// chr2L:21506803-21507681 (+) // 99.89 // /// chr2L:21511847-21512725 (+) // 99.89 // /// chr2L:21536465-21537343 (+) // 99.89 // /// chrUextra:16984316-17104264 (-) // 100.0 // /// chrUextra:10801500-10986150 (-) // 99.77 //
Probeset : 1629740_at
Accessions : protein= NP_001027282; /// NP_001027286; /// NP_001027290; /// NP_001027295; /// NP_001027299; /// NP_001027304; /// NP_001027309; /// NP_001027314; /// NP_001027319; /// NP_001027324; /// NP_001027329; /// NP_001027334; /// NP_001027339; /// NP_001027344; /// NP_001027349; /// NP_001027354; /// NP_001027359; /// NP_001027364; /// NP_001027369; /// NP_001027374; /// NP_001027379; /// NP_001027384; /// NP_724341;, nucleotide= NM_001032111; /// NM_001032115; /// NM_001032119; /// NM_001032124; /// NM_001032128; /// NM_001032133; /// NM_001032138; /// NM_001032143; /// NM_001032148; /// NM_001032153; /// NM_001032158; /// NM_001032163; /// NM_001032168; /// NM_001032173; /// NM_001032178; /// NM_001032183; /// NM_001032188; /// NM_001032193; /// NM_001032198; /// NM_001032203; /// NM_001032208; /// NM_001032213; /// NM_165380;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structu
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0051617 /// FBgn0053801 /// FBgn0053804 /// FBgn0053807 /// FBgn0053810 /// FBgn0053813 /// FBgn0053816 /// FBgn0053819 /// FBgn0053822 /// FBgn0053825 /// FBgn0053828 /// FBgn0053831 /// FBgn0053834 /// FBgn0053837 /// FBgn0053840 /// FBgn0053843 /// FBgn0053846 /// FBgn0053849 /// FBgn0053852 /// FBgn0053855 /// FBgn0053858 /// FBgn0053861 /// FBgn0053864.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 214 of 4 0.00Down
Head64 194 of 4 0.00Down
Eye21 24 of 4 0.01Down
Thoracicoabdominal ganglion51 134 of 4 0.00Down
Salivary gland519 574 of 4 0.36Down
Crop164 474 of 4 0.10Down
Midgut41 64 of 4 0.00Down
Tubule71 64 of 4 0.00Down
Hindgut117 84 of 4 0.10Down
Heart25 44 of 4 0.02Down
Fat body155 684 of 4 0.11Down
Ovary2995 504 of 4 2.10Up
Testis37 24 of 4 0.00Down
Male accessory glands191 544 of 4 0.10Down
Virgin spermatheca175 194 of 4 0.12Down
Mated spermatheca195 494 of 4 0.14Down
Adult carcass51 84 of 4 0.00Down
Larval CNS152 234 of 4 0.11Down
Larval Salivary gland171 84 of 4 0.12Down
Larval midgut41 54 of 4 0.03Down
Larval tubule110 104 of 4 0.10Down
Larval hindgut73 84 of 4 0.05Down
Larval fat body106 134 of 4 0.10Down
Larval trachea48 64 of 4 0.03Down
Larval carcass44 34 of 4 0.03Down
S2 cells (growing)87 34 of 4 0.06Down
Whole fly1435 654 of 4



His1:CG31617 /// His1:CG33801 /// His1:CG33804 /// His1:CG33807 /// His1:CG33810 /// His1:CG33813 /// His1:CG33816 /// His1:CG33819 /// His1:CG33822 /// His1:CG33825 /// His1:CG33828 /// His1:CG33831 /// His1:CG33834 /// His1:CG33837 /// His1:CG33840 /// His1:CG33843 /// His1:CG33846 /// His1:CG33849 /// His1:CG33852 /// His1:CG33855 /// His1:CG33858 /// His1:CG33861 /// His1:CG33864 (His1:CG31617 /// His1:CG33801 /// His1:CG33804 /// His1:CG33807 /// His1:CG33810 /// His1:CG33813 /// His1:CG33816 /// His1:CG33819 /// His1:CG33822 /// His1:CG33825 /// His1:CG33828 /// His1:CG33831 /// His1:CG33834 /// His1:CG33837 /// His1:CG33840 /// His1:CG33843 /// His1:CG33846 /// His1:CG33849 /// His1:CG33852 /// His1:CG33855 /// His1:CG33858 /// His1:CG33861 /// His1:CG33864):

Annotation Number : CR31614
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051614 /// FBgn0051617 /// FBgn0053801 /// FBgn0053804 /// FBgn0053807 /// FBgn0053810 /// FBgn0053813 /// FBgn0053816 /// FBgn0053819 /// FBgn0053822 /// FBgn0053825 /// FBgn0053828 /// FBgn0053831 /// FBgn0053834 /// FBgn0053837 /// FBgn0053840 /// FBgn0053843 /// FBgn0053846 /// FBgn0053849 /// FBgn0053852 /// FBgn0053855 /// FBgn0053858 /// FBgn0053861 /// FBgn0053864
Gbrowse : chrUextra:10958515-11029897 (+) // 97.1 // /// chrUextra:18013913-18251413 (+) // 96.96 // /// chrUextra:17519559-17973946 (+) // 96.96 // /// chrUextra:10798897-11389772 (+) // 97.1 // /// chr2L:21542983-21543706 (+) // 100.0 // /// chr2L:21437130-21437835 (+) // 97.1 // /// chr2L:21456232-21456937 (+) // 97.1 // /// chr2L:21461292-21461997 (+) // 97.1 // /// chr2L:21466335-21467040 (+) // 97.1 // /// chr2L:21471378-21472083 (+) // 97.1 // /// chr2L:21476421-21477126 (+) // 97.1 // /// chr2L:21481464-21482169 (+) // 97.1 // /// chr2L:21521735-21522440 (+) // 97.1 // /// chr2L:21526578-21527283 (+) // 97.1 // /// chr2L:21531421-21532126 (+) // 97.1 // /// chr2L:21421974-21422679 (+) // 96.96 // /// chr2L:21427035-21427740 (+) // 96.96 // /// chr2L:21451171-21451876 (+) // 96.96 // /// chrUextra:12271498-12279438 (-) // 97.1 // /// chrUextra:16984489-17104264 (-) // 97.1 //
Probeset : 1631321_s_at
Accessions : protein= NP_001027282; /// NP_001027286; /// NP_001027290; /// NP_001027295; /// NP_001027299; /// NP_001027304; /// NP_001027309; /// NP_001027314; /// NP_001027319; /// NP_001027324; /// NP_001027329; /// NP_001027334; /// NP_001027339; /// NP_001027344; /// NP_001027349; /// NP_001027354; /// NP_001027359; /// NP_001027364; /// NP_001027369; /// NP_001027374; /// NP_001027379; /// NP_001027384; /// NP_724341;, nucleotide= NM_001032111; /// NM_001032115; /// NM_001032119; /// NM_001032124; /// NM_001032128; /// NM_001032133; /// NM_001032138; /// NM_001032143; /// NM_001032148; /// NM_001032153; /// NM_001032158; /// NM_001032163; /// NM_001032168; /// NM_001032173; /// NM_001032178; /// NM_001032183; /// NM_001032188; /// NM_001032193; /// NM_001032198; /// NM_001032203; /// NM_001032208; /// NM_001032213; /// NM_165380;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structu
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0051614 /// FBgn0051617 /// FBgn0053801 /// FBgn0053804 /// FBgn0053807 /// FBgn0053810 /// FBgn0053813 /// FBgn0053816 /// FBgn0053819 /// FBgn0053822 /// FBgn0053825 /// FBgn0053828 /// FBgn0053831 /// FBgn0053834 /// FBgn0053837 /// FBgn0053840 /// FBgn0053843 /// FBgn0053846 /// FBgn0053849 /// FBgn0053852 /// FBgn0053855 /// FBgn0053858 /// FBgn0053861 /// FBgn0053864.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 294 of 4 0.30Down
Head146 344 of 4 0.20Down
Eye32 24 of 4 0.05Down
Thoracicoabdominal ganglion82 204 of 4 0.10Down
Salivary gland458 384 of 4 0.68None
Crop240 744 of 4 0.40Down
Midgut108 24 of 4 0.20Down
Tubule99 34 of 4 0.10Down
Hindgut236 164 of 4 0.40Down
Heart33 54 of 4 0.05Down
Fat body316 1674 of 4 0.47Down
Ovary1340 604 of 4 2.00Up
Testis40 54 of 4 0.10Down
Male accessory glands254 734 of 4 0.40Down
Virgin spermatheca278 274 of 4 0.41Down
Mated spermatheca297 894 of 4 0.44Down
Adult carcass57 63 of 4 0.10Down
Larval CNS290 554 of 4 0.43Down
Larval Salivary gland215 214 of 4 0.32Down
Larval midgut50 54 of 4 0.08Down
Larval tubule119 134 of 4 0.20Down
Larval hindgut95 174 of 4 0.14Down
Larval fat body83 34 of 4 0.10Down
Larval trachea45 44 of 4 0.07Down
Larval carcass71 124 of 4 0.11Down
S2 cells (growing)431 274 of 4 0.64None
Whole fly674 814 of 4

Looking for FBgn0053843. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime