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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053845 through 18771 annotations produced 2 hits



His3:CG31613 /// His3:CG33803 /// His3:CG33806 /// His3:CG33809 /// His3:CG33812 /// His3:CG33815 /// His3:CG33818 /// His3:CG33821 /// His3:CG33824 /// His3:CG33827 /// His3:CG33830 /// His3:CG33833 /// His3:CG33836 /// His3:CG33839 /// His3:CG33842 /// His3:CG33845 /// His3:CG33848 /// His3:CG33851 /// His3:CG33854 /// His3:CG33857 /// His3:CG33860 /// His3:CG33863 /// His3:CG33866 (His3:CG31613 /// His3:CG33803 /// His3:CG33806 /// His3:CG33809 /// His3:CG33812 /// His3:CG33815 /// His3:CG33818 /// His3:CG33821 /// His3:CG33824 /// His3:CG33827 /// His3:CG33830 /// His3:CG33833 /// His3:CG33836 /// His3:CG33839 /// His3:CG33842 /// His3:CG33845 /// His3:CG33848 /// His3:CG33851 /// His3:CG33854 /// His3:CG33857 /// His3:CG33860 /// His3:CG33863 /// His3:CG33866):

Annotation Number : CG31613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051613 /// FBgn0053803 /// FBgn0053806 /// FBgn0053809 /// FBgn0053812 /// FBgn0053815 /// FBgn0053818 /// FBgn0053821 /// FBgn0053824 /// FBgn0053827 /// FBgn0053830 /// FBgn0053833 /// FBgn0053836 /// FBgn0053839 /// FBgn0053842 /// FBgn0053845 /// FBgn0053848 /// FBgn0053851 /// FBgn0053854 /// FBgn0053857 /// FBgn0053860 /// FBgn0053863 /// FBgn0053866
Gbrowse : chrUextra:1208196-1208607 (+) // 100.0 // /// chrUextra:7733671-7734082 (+) // 100.0 // /// chrUextra:7958547-7958958 (+) // 100.0 // /// chrUextra:9788102-9788513 (+) // 100.0 // /// chrUextra:10534527-10534938 (+) // 100.0 // /// chrUextra:12095133-12095544 (+) // 100.0 // /// chrUextra:12188206-12188617 (+) // 100.0 // /// chrUextra:13391895-13392306 (+) // 100.0 // /// chrUextra:17944964-17945375 (+) // 100.0 // /// chrUextra:19464124-19464535 (+) // 100.0 // /// chrUextra:9266712-9403271 (+) // 100.0 // /// chr2L:21420185-21420596 (+) // 100.0 // /// chr2L:21425249-21425660 (+) // 100.0 // /// chr2L:21430311-21430722 (+) // 100.0 // /// chr2L:21435355-21435766 (+) // 100.0 // /// chr2L:21440243-21440654 (+) // 100.0 // /// chr2L:21454444-21454855 (+) // 100.0 // /// chrUextra:8670477-8670888 (-) // 100.0 // /// chrUextra:10813270-10813681 (-) // 100.0 // /// chrUextra:10937176-10937587 (-) // 100.0 //
Probeset : 1626867_at
Accessions : protein= NP_001027285; /// NP_001027289; /// NP_001027294; /// NP_001027298; /// NP_001027303; /// NP_001027308; /// NP_001027313; /// NP_001027318; /// NP_001027323; /// NP_001027328; /// NP_001027333; /// NP_001027338; /// NP_001027343; /// NP_001027348; /// NP_001027353; /// NP_001027358; /// NP_001027363; /// NP_001027368; /// NP_001027373; /// NP_001027378; /// NP_001027383; /// NP_001027387; /// NP_724345;, nucleotide= NM_001032114; /// NM_001032118; /// NM_001032123; /// NM_001032127; /// NM_001032132; /// NM_001032137; /// NM_001032142; /// NM_001032147; /// NM_001032152; /// NM_001032157; /// NM_001032162; /// NM_001032167; /// NM_001032172; /// NM_001032177; /// NM_001032182; /// NM_001032187; /// NM_001032192; /// NM_001032197; /// NM_001032202; /// NM_001032207; /// NM_001032212; /// NM_001032216; /// NM_165384;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from elec
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0051613 /// FBgn0053803 /// FBgn0053806 /// FBgn0053809 /// FBgn0053812 /// FBgn0053815 /// FBgn0053818 /// FBgn0053821 /// FBgn0053824 /// FBgn0053827 /// FBgn0053830 /// FBgn0053833 /// FBgn0053836 /// FBgn0053839 /// FBgn0053842 /// FBgn0053845 /// FBgn0053848 /// FBgn0053851 /// FBgn0053854 /// FBgn0053857 /// FBgn0053860 /// FBgn0053863 /// FBgn0053866.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 173 of 4 0.60None
Head27 44 of 4 0.50Down
Eye28 24 of 4 0.52Down
Thoracicoabdominal ganglion34 64 of 4 0.60None
Salivary gland137 114 of 4 2.54Up
Crop64 183 of 4 1.20None
Midgut5 00 of 4 0.10Down
Tubule39 62 of 4 0.70Down
Hindgut61 34 of 4 1.10None
Heart20 44 of 4 0.38Down
Fat body89 434 of 4 1.66None
Ovary120 114 of 4 2.20Up
Testis19 32 of 4 0.40Down
Male accessory glands30 181 of 4 0.60None
Virgin spermatheca98 114 of 4 1.81Up
Mated spermatheca152 504 of 4 2.81None
Adult carcass3 00 of 4 0.10Down
Larval CNS122 324 of 4 2.25Up
Larval Salivary gland65 124 of 4 1.20None
Larval midgut4 10 of 4 0.08Down
Larval tubule41 83 of 4 0.80None
Larval hindgut28 63 of 4 0.53Down
Larval fat body20 31 of 4 0.40Down
Larval trachea48 44 of 4 0.90None
Larval carcass16 30 of 4 0.31Down
S2 cells (growing)49 64 of 4 0.92None
Whole fly54 54 of 4



His3:CG31613 /// His3:CG33803 /// His3:CG33806 /// His3:CG33809 /// His3:CG33812 /// His3:CG33815 /// His3:CG33818 /// His3:CG33821 /// His3:CG33824 /// His3:CG33827 /// His3:CG33830 /// His3:CG33833 /// His3:CG33836 /// His3:CG33839 /// His3:CG33842 /// His3:CG33845 /// His3:CG33848 /// His3:CG33851 /// His3:CG33854 /// His3:CG33857 /// His3:CG33860 /// His3:CG33863 /// His3:CG33866 (His3:CG31613 /// His3:CG33803 /// His3:CG33806 /// His3:CG33809 /// His3:CG33812 /// His3:CG33815 /// His3:CG33818 /// His3:CG33821 /// His3:CG33824 /// His3:CG33827 /// His3:CG33830 /// His3:CG33833 /// His3:CG33836 /// His3:CG33839 /// His3:CG33842 /// His3:CG33845 /// His3:CG33848 /// His3:CG33851 /// His3:CG33854 /// His3:CG33857 /// His3:CG33860 /// His3:CG33863 /// His3:CG33866):

Annotation Number : CG31613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051613 /// FBgn0051754 /// FBgn0053803 /// FBgn0053806 /// FBgn0053809 /// FBgn0053812 /// FBgn0053815 /// FBgn0053818 /// FBgn0053821 /// FBgn0053824 /// FBgn0053827 /// FBgn0053830 /// FBgn0053833 /// FBgn0053836 /// FBgn0053839 /// FBgn0053842 /// FBgn0053845 /// FBgn0053848 /// FBgn0053851 /// FBgn0053854 /// FBgn0053857 /// FBgn0053860 /// FBgn0053863 /// FBgn0053866
Gbrowse : chrUextra:1208196-1208607 (+) // 100.0 // /// chrUextra:7733671-7734082 (+) // 100.0 // /// chrUextra:7958547-7958958 (+) // 100.0 // /// chrUextra:9788102-9788513 (+) // 100.0 // /// chrUextra:10534527-10534938 (+) // 100.0 // /// chrUextra:12095133-12095544 (+) // 100.0 // /// chrUextra:12188206-12188617 (+) // 100.0 // /// chrUextra:13391895-13392306 (+) // 100.0 // /// chrUextra:17944964-17945375 (+) // 100.0 // /// chrUextra:19464124-19464535 (+) // 100.0 // /// chrUextra:9266712-9403271 (+) // 100.0 // /// chr2L:21420185-21420596 (+) // 100.0 // /// chr2L:21425249-21425660 (+) // 100.0 // /// chr2L:21430311-21430722 (+) // 100.0 // /// chr2L:21435355-21435766 (+) // 100.0 // /// chr2L:21440243-21440654 (+) // 100.0 // /// chr2L:21454444-21454855 (+) // 100.0 // /// chrUextra:8670477-8670888 (-) // 100.0 // /// chrUextra:10813270-10813681 (-) // 100.0 // /// chrUextra:10937176-10937587 (-) // 100.0 //
Probeset : 1638308_s_at
Accessions : protein= NP_001027285; /// NP_001027289; /// NP_001027294; /// NP_001027298; /// NP_001027303; /// NP_001027308; /// NP_001027313; /// NP_001027318; /// NP_001027323; /// NP_001027328; /// NP_001027333; /// NP_001027338; /// NP_001027343; /// NP_001027348; /// NP_001027353; /// NP_001027358; /// NP_001027363; /// NP_001027368; /// NP_001027373; /// NP_001027378; /// NP_001027383; /// NP_001027387; /// NP_724345;, nucleotide= NM_001032114; /// NM_001032118; /// NM_001032123; /// NM_001032127; /// NM_001032132; /// NM_001032137; /// NM_001032142; /// NM_001032147; /// NM_001032152; /// NM_001032157; /// NM_001032162; /// NM_001032167; /// NM_001032172; /// NM_001032177; /// NM_001032182; /// NM_001032187; /// NM_001032192; /// NM_001032197; /// NM_001032202; /// NM_001032207; /// NM_001032212; /// NM_001032216; /// NM_165384;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from elec
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0051613 /// FBgn0051754 /// FBgn0053803 /// FBgn0053806 /// FBgn0053809 /// FBgn0053812 /// FBgn0053815 /// FBgn0053818 /// FBgn0053821 /// FBgn0053824 /// FBgn0053827 /// FBgn0053830 /// FBgn0053833 /// FBgn0053836 /// FBgn0053839 /// FBgn0053842 /// FBgn0053845 /// FBgn0053848 /// FBgn0053851 /// FBgn0053854 /// FBgn0053857 /// FBgn0053860 /// FBgn0053863 /// FBgn0053866.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 414 of 4 1.10None
Head51 134 of 4 0.70None
Eye39 34 of 4 0.55Down
Thoracicoabdominal ganglion66 194 of 4 0.90None
Salivary gland315 84 of 4 4.33Up
Crop154 444 of 4 2.10None
Midgut29 10 of 4 0.40Down
Tubule88 134 of 4 1.20None
Hindgut117 44 of 4 1.60Up
Heart28 74 of 4 0.40Down
Fat body240 1554 of 4 3.30None
Ovary208 334 of 4 2.90Up
Testis44 64 of 4 0.60None
Male accessory glands93 444 of 4 1.30None
Virgin spermatheca266 334 of 4 3.65Up
Mated spermatheca384 1424 of 4 5.28None
Adult carcass25 51 of 4 0.40Down
Larval CNS337 934 of 4 4.64Up
Larval Salivary gland95 124 of 4 1.31None
Larval midgut17 21 of 4 0.24Down
Larval tubule63 54 of 4 0.90None
Larval hindgut63 114 of 4 0.88None
Larval fat body36 81 of 4 0.50Down
Larval trachea73 84 of 4 1.01None
Larval carcass42 24 of 4 0.59None
S2 cells (growing)74 34 of 4 1.03None
Whole fly72 104 of 4

Looking for FBgn0053845. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime