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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053898 through 18771 annotations produced 1 hits



/// His2B:CG17949 /// His2B:CG33868 /// His2B:CG33870 /// His2B:CG33872 /// His2B:CG33874 /// His2B:CG33876 /// His2B:CG33878 /// His2B:CG33880 /// His2B:CG33882 /// His2B:CG33884 /// His2B:CG33886 /// His2B:CG33888 /// His2B:CG33890 /// His2B:CG33892 (CR40461 /// His2B:CG17949 /// His2B:CG33868 /// His2B:CG33870 /// His2B:CG33872 /// His2B:CG33874 /// His2B:CG33876 /// His2B:CG33878 /// His2B:CG33880 /// His2B:CG33882 /// His2B:CG33884 /// His2B:CG33886 /// His2B:CG33888 /// His2B:CG33890 /// His2B:CG33892 /// His2B:CG33894 /// His2B:CG33896 /// His2B:CG33898 /// His2B:CG33900 /// His2B:CG33902 /// His2B:CG33904 /// His2B:CG33906 /// His2B:CG33908 /// His2B:CG33910):

Annotation Number : CG17949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053868 /// FBgn0053870 /// FBgn0053872 /// FBgn0053874 /// FBgn0053876 /// FBgn0053878 /// FBgn0053880 /// FBgn0053882 /// FBgn0053884 /// FBgn0053886 /// FBgn0053888 /// FBgn0053890 /// FBgn0053892 /// FBgn0053894 /// FBgn0053896 /// FBgn0053898 /// FBgn0053900 /// FBgn0053902 /// FBgn0053904 /// FBgn0053906 /// FBgn0053908 /// FBgn0053910 /// FBgn0058461 /// FBgn0061209
Gbrowse : chrUextra:10298753-10299198 (+) // 100.0 // /// chrUextra:14943613-14944058 (+) // 100.0 // /// chrUextra:15088848-15089293 (+) // 100.0 // /// chrUextra:15219895-15220340 (+) // 100.0 // /// chrUextra:15894816-15895261 (+) // 100.0 // /// chrUextra:16973916-16974361 (+) // 100.0 // /// chrUextra:16982794-16983239 (+) // 100.0 // /// chrUextra:10770587-10771034 (+) // 100.0 // /// chrUextra:12994741-13158538 (+) // 100.0 // /// chrUextra:10805558-10806003 (-) // 100.0 // /// chrUextra:12813724-12814169 (-) // 100.0 // /// chrUextra:15886858-15887303 (-) // 100.0 // /// chrUextra:12632785-13005542 (-) // 100.0 // /// chr2L:21418258-21418703 (-) // 100.0 // /// chr2L:21423160-21423605 (-) // 100.0 // /// chr2L:21428221-21428666 (-) // 100.0 // /// chr2L:21433268-21433713 (-) // 100.0 // /// chr2L:21438316-21438761 (-) // 100.0 // /// chr2L:21452357-21452802 (-) // 100.0 // /// chr2L:21457418-21457863 (-) // 100.0 //
Probeset : 1623281_s_at
Accessions : protein= NP_001015084; /// NP_001027283; /// NP_001027287; /// NP_001027291; /// NP_001027296; /// NP_001027300; /// NP_001027305; /// NP_001027310; /// NP_001027315; /// NP_001027320; /// NP_001027325; /// NP_001027330; /// NP_001027335; /// NP_001027340; /// NP_001027345; /// NP_001027350; /// NP_001027355; /// NP_001027360; /// NP_001027365; /// NP_001027370; /// NP_001027375; /// NP_001027380; /// NP_001027385; /// NP_724342;, nucleotide= NM_001015084; /// NM_001032112; /// NM_001032116; /// NM_001032120; /// NM_001032125; /// NM_001032129; /// NM_001032134; /// NM_001032139; /// NM_001032144; /// NM_001032149; /// NM_001032154; /// NM_001032159; /// NM_001032164; /// NM_001032169; /// NM_001032174; /// NM_001032179; /// NM_001032184; /// NM_001032189; /// NM_001032194; /// NM_001032199; /// NM_001032204; /// NM_001032209; /// NM_001032214; /// NM_165381;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0000786 // nucleosome // inferred from sequence or stru
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or st
FlyMine data for FBgn0053868 /// FBgn0053870 /// FBgn0053872 /// FBgn0053874 /// FBgn0053876 /// FBgn0053878 /// FBgn0053880 /// FBgn0053882 /// FBgn0053884 /// FBgn0053886 /// FBgn0053888 /// FBgn0053890 /// FBgn0053892 /// FBgn0053894 /// FBgn0053896 /// FBgn0053898 /// FBgn0053900 /// FBgn0053902 /// FBgn0053904 /// FBgn0053906 /// FBgn0053908 /// FBgn0053910 /// FBgn0058461 /// FBgn0061209.
BioGrid reports that CG17949 interacts with CG3201 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 103 of 4 0.10Down
Head15 32 of 4 0.00Down
Eye17 13 of 4 0.05Down
Thoracicoabdominal ganglion20 14 of 4 0.10Down
Salivary gland109 94 of 4 0.31Down
Crop38 113 of 4 0.10Down
Midgut24 21 of 4 0.10Down
Tubule14 01 of 4 0.00Down
Hindgut33 34 of 4 0.10Down
Heart14 23 of 4 0.04Down
Fat body95 334 of 4 0.27Down
Ovary813 454 of 4 2.30Up
Testis764 344 of 4 2.20Up
Male accessory glands42 232 of 4 0.10Down
Virgin spermatheca98 134 of 4 0.28Down
Mated spermatheca115 434 of 4 0.33Down
Adult carcass13 42 of 4 0.00Down
Larval CNS156 414 of 4 0.44Down
Larval Salivary gland68 74 of 4 0.19Down
Larval midgut13 30 of 4 0.04Down
Larval tubule22 22 of 4 0.10Down
Larval hindgut30 63 of 4 0.09Down
Larval fat body129 554 of 4 0.40Down
Larval trachea35 124 of 4 0.10Down
Larval carcass15 21 of 4 0.04Down
S2 cells (growing)80 44 of 4 0.23Down
Whole fly354 234 of 4

Looking for FBgn0053898. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime