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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053923 through 18771 annotations produced 1 hits



/// (CG33922 /// CG33923):

Annotation Number : Stencil:2L:1345492:1338930:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053922 /// FBgn0053923
Gbrowse : chr2L:1337264-1343826 (-) // 100.0 //
Probeset : 1636763_at
Accessions : protein= NP_001027216; /// NP_001027217;, nucleotide= NM_001032045; /// NM_001032046;
FlyMine data for FBgn0053922 /// FBgn0053923.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.40None
Head4 10 of 4 3.50None
Eye2 00 of 4 2.09None
Thoracicoabdominal ganglion3 00 of 4 2.30None
Salivary gland9 30 of 4 6.96None
Crop2 10 of 4 1.60None
Midgut3 10 of 4 2.70None
Tubule4 10 of 4 3.00Up
Hindgut4 00 of 4 3.30Up
Heart3 00 of 4 2.31None
Fat body3 20 of 4 2.70None
Ovary2 10 of 4 1.70None
Testis5 20 of 4 3.80None
Male accessory glands11 10 of 4 8.60Up
Virgin spermatheca6 00 of 4 4.46Up
Mated spermatheca6 31 of 4 4.70None
Adult carcass4 30 of 4 3.10None
Larval CNS1 00 of 4 1.17None
Larval Salivary gland7 10 of 4 5.43Up
Larval midgut4 10 of 4 3.19None
Larval tubule1 00 of 4 1.30None
Larval hindgut2 00 of 4 1.67None
Larval fat body2 10 of 4 2.00None
Larval trachea2 10 of 4 1.78None
Larval carcass3 00 of 4 2.76None
S2 cells (growing)2 00 of 4 1.74None
Whole fly1 00 of 4

Looking for FBgn0053923. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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