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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053963 through 18771 annotations produced 1 hits



():

Annotation Number : GH04518
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053963
Gbrowse : chrX:12553494-12554670 (+) // 99.58 //
Probeset : 1634610_at
Accessions : protein= , nucleotide= NR_002692;
FlyMine data for FBgn0053963.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 13 of 4 0.90None
Head4 ± 12 of 4 0.80None
Eye9 ± 22 of 4 1.51None
Thoracicoabdominal ganglion4 ± 00 of 4 0.70None
Salivary gland18 ± 12 of 4 2.87Up
Crop14 ± 13 of 4 2.30Up
Midgut18 ± 14 of 4 3.00Up
Tubule22 ± 24 of 4 3.60Up
Hindgut16 ± 14 of 4 2.60Up
Heart26 ± 24 of 4 4.14Up
Fat body19 ± 44 of 4 3.13Up
Ovary4 ± 11 of 4 0.60None
Testis2 ± 00 of 4 0.50Down
Male accessory glands11 ± 11 of 4 1.90Up
Virgin spermatheca21 ± 34 of 4 3.48Up
Mated spermatheca20 ± 34 of 4 3.29Up
Adult carcass9 ± 11 of 4 1.50None
Larval CNS5 ± 02 of 4 0.88None
Larval Salivary gland4 ± 11 of 4 0.72None
Larval midgut8 ± 11 of 4 1.37None
Larval tubule8 ± 12 of 4 1.30None
Larval hindgut6 ± 03 of 4 1.10None
Larval fat body19 ± 14 of 4 3.00Up
Larval trachea34 ± 44 of 4 5.42Up
Larval carcass7 ± 22 of 4 1.22None
S2 cells (growing)6 ± 12 of 4 0.99None
Whole fly6 ± 04 of 4

Looking for FBgn0053963. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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