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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053970 through 18771 annotations produced 2 hits



(CG33970):

Annotation Number : CG14559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053970
Gbrowse : chr3R:22144079-22157369 (+) // 100.0 //
Probeset : 1627672_at
Accessions : protein= NP_001034070; /// NP_001034071;, nucleotide= NM_001038981; /// NM_001038982;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transporter complex
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0053970.
VDRC has 6 RNAi stocks for FBgn0053970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 13 of 4 0.30Down
Head95 ± 204 of 4 2.30None
Eye27 ± 24 of 4 0.67None
Thoracicoabdominal ganglion10 ± 22 of 4 0.30Down
Salivary gland61 ± 144 of 4 1.50None
Crop1411 ± 454 of 434.20Up
Midgut34 ± 24 of 4 0.80None
Tubule10 ± 11 of 4 0.30Down
Hindgut620 ± 334 of 415.10Up
Heart6 ± 20 of 4 0.15Down
Fat body17 ± 40 of 4 0.41Down
Ovary5 ± 00 of 4 0.10Down
Testis7 ± 01 of 4 0.20Down
Male accessory glands11 ± 10 of 4 0.30Down
Virgin spermatheca26 ± 32 of 4 0.65Down
Mated spermatheca31 ± 53 of 4 0.75None
Adult carcass78 ± 104 of 4 1.90Up
Larval CNS10 ± 40 of 4 0.24Down
Larval Salivary gland18 ± 11 of 4 0.44Down
Larval midgut7 ± 11 of 4 0.18Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut11 ± 11 of 4 0.28Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea29 ± 24 of 4 0.71None
Larval carcass26 ± 33 of 4 0.64Down
S2 cells (growing)4 ± 10 of 4 0.11Down
Whole fly41 ± 44 of 4



(CG33970):

Annotation Number : CG31085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053970
Gbrowse : chr3R:22174626-22187711 (+) // 100.0 //
Probeset : 1634597_a_at
Accessions : protein= NP_001034070; /// NP_001034071;, nucleotide= NM_001038981; /// NM_001038982;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transporter complex
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0053970.
VDRC has 6 RNAi stocks for FBgn0053970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 44 of 4 0.10Down
Head1166 ± 664 of 4 3.20Up
Eye279 ± 334 of 4 0.76None
Thoracicoabdominal ganglion63 ± 44 of 4 0.20Down
Salivary gland681 ± 224 of 4 1.86Up
Crop5411 ± 2844 of 414.80Up
Midgut224 ± 64 of 4 0.60Down
Tubule31 ± 123 of 4 0.10Down
Hindgut3590 ± 814 of 4 9.80Up
Heart11 ± 13 of 4 0.03Down
Fat body16 ± 72 of 4 0.04Down
Ovary56 ± 124 of 4 0.20Down
Testis120 ± 14 of 4 0.30Down
Male accessory glands13 ± 11 of 4 0.00Down
Virgin spermatheca42 ± 54 of 4 0.12Down
Mated spermatheca57 ± 54 of 4 0.16Down
Adult carcass755 ± 194 of 4 2.10Up
Larval CNS13 ± 34 of 4 0.04Down
Larval Salivary gland74 ± 64 of 4 0.20Down
Larval midgut16 ± 33 of 4 0.04Down
Larval tubule14 ± 11 of 4 0.00Down
Larval hindgut108 ± 84 of 4 0.30Down
Larval fat body20 ± 42 of 4 0.10Down
Larval trachea160 ± 184 of 4 0.44Down
Larval carcass342 ± 564 of 4 0.93None
S2 cells (growing)20 ± 14 of 4 0.05Down
Whole fly366 ± 284 of 4

Looking for FBgn0053970. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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