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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053993 through 18771 annotations produced 2 hits



/// (CG33993 /// DwilCG33993):

Annotation Number : CG13290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053993
Gbrowse : chr3L:5930378-5943755 (-) // 100.0 //
Probeset : 1628447_at
Accessions : protein= NP_001033991; /// NP_001163352;, nucleotide= NM_001038902; /// NM_001169881;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0053993.
VDRC has 4 RNAi stocks for FBgn0053993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 13 of 4 1.10None
Head8 10 of 4 1.30None
Eye6 11 of 4 0.93None
Thoracicoabdominal ganglion5 20 of 4 0.80None
Salivary gland7 20 of 4 1.09None
Crop3 10 of 4 0.50None
Midgut9 20 of 4 1.40None
Tubule11 12 of 4 1.70Up
Hindgut8 10 of 4 1.30None
Heart4 11 of 4 0.72None
Fat body10 50 of 4 1.52None
Ovary3 10 of 4 0.50None
Testis3 10 of 4 0.50None
Male accessory glands6 20 of 4 1.00None
Virgin spermatheca7 10 of 4 1.11None
Mated spermatheca4 00 of 4 0.59None
Adult carcass2 00 of 4 0.40Down
Larval CNS8 23 of 4 1.31None
Larval Salivary gland8 10 of 4 1.24None
Larval midgut9 20 of 4 1.34None
Larval tubule6 10 of 4 1.00None
Larval hindgut3 00 of 4 0.49Down
Larval fat body3 00 of 4 0.50Down
Larval trachea6 40 of 4 0.97None
Larval carcass4 10 of 4 0.66None
S2 cells (growing)6 20 of 4 0.93None
Whole fly6 10 of 4



/// (CG33993 /// DwilCG33993):

Annotation Number : CG13289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053993
Gbrowse : chr3L:5926869-5927778 (-) // 100.0 //
Probeset : 1639605_at
Accessions : protein= NP_001033991; /// NP_001163352;, nucleotide= NM_001038902; /// NM_001169881;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0053993.
VDRC has 4 RNAi stocks for FBgn0053993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 23 of 4 1.40None
Head9 33 of 4 1.30None
Eye17 14 of 4 2.26Up
Thoracicoabdominal ganglion8 01 of 4 1.10None
Salivary gland2 00 of 4 0.33Down
Crop2 10 of 4 0.30Down
Midgut12 20 of 4 1.60None
Tubule22 33 of 4 2.90Up
Hindgut3 10 of 4 0.50None
Heart6 10 of 4 0.82None
Fat body4 21 of 4 0.61None
Ovary5 00 of 4 0.70None
Testis4 00 of 4 0.60Down
Male accessory glands10 41 of 4 1.30None
Virgin spermatheca6 00 of 4 0.88None
Mated spermatheca7 10 of 4 0.94None
Adult carcass7 20 of 4 1.00None
Larval CNS12 23 of 4 1.58Up
Larval Salivary gland3 10 of 4 0.44None
Larval midgut7 10 of 4 0.90None
Larval tubule10 02 of 4 1.40None
Larval hindgut3 10 of 4 0.42None
Larval fat body4 10 of 4 0.50None
Larval trachea4 30 of 4 0.60None
Larval carcass7 00 of 4 0.99None
S2 cells (growing)5 10 of 4 0.67None
Whole fly7 01 of 4

Looking for FBgn0053993. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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