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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053995 through 18771 annotations produced 1 hits



/// (CG31919 /// CG33995):

Annotation Number : CG31919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031674 /// FBgn0053995
Gbrowse : chr2L:5043319-5048366 (+) // 100.0 //
Probeset : 1632394_s_at
Accessions : protein= NP_001033874; /// NP_001033875; /// NP_001033876; /// NP_001033877; /// NP_001162882; /// NP_001162883; /// NP_608900; /// NP_723051; /// NP_723052;, nucleotide= NM_001038785; /// NM_001038786; /// NM_001038787; /// NM_001038788; /// NM_001169411; /// NM_001169412; /// NM_135056; /// NM_164622; /// NM_164623;
FlyMine data for FBgn0031674 /// FBgn0053995.
BioGrid reports that CG31919 interacts with CG3613 CG6030 CG6985 CG8173 CG9014 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1241 ± 234 of 4 1.60Up
Head1124 ± 394 of 4 1.40Up
Eye1268 ± 504 of 4 1.60Up
Thoracicoabdominal ganglion1648 ± 104 of 4 2.10Up
Salivary gland1292 ± 464 of 4 1.63Up
Crop2305 ± 174 of 4 2.90Up
Midgut1426 ± 174 of 4 1.80Up
Tubule1638 ± 1954 of 4 2.10Up
Hindgut2560 ± 304 of 4 3.20Up
Heart1049 ± 324 of 4 1.33Up
Fat body1039 ± 824 of 4 1.31Up
Ovary828 ± 124 of 4 1.00None
Testis675 ± 234 of 4 0.90Down
Male accessory glands729 ± 244 of 4 0.90None
Virgin spermatheca1221 ± 774 of 4 1.54Up
Mated spermatheca1605 ± 744 of 4 2.03Up
Adult carcass1004 ± 384 of 4 1.30Up
Larval CNS1054 ± 184 of 4 1.33Up
Larval Salivary gland1400 ± 414 of 4 1.77Up
Larval midgut1842 ± 274 of 4 2.33Up
Larval tubule3851 ± 1174 of 4 4.90Up
Larval hindgut2556 ± 464 of 4 3.23Up
Larval fat body1294 ± 1084 of 4 1.60Up
Larval trachea1487 ± 434 of 4 1.88Up
Larval carcass1872 ± 464 of 4 2.37Up
S2 cells (growing)923 ± 104 of 4 1.17Up
Whole fly790 ± 264 of 4

Looking for FBgn0053995. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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