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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053998 through 18771 annotations produced 1 hits



(CG33998):

Annotation Number : HDC07203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053998
Gbrowse : chr2R:14626005-14626429 (+) // 100.0 //
Probeset : 1626916_at
Accessions : protein= NP_001033959;, nucleotide= NM_001038870;
FlyMine data for FBgn0053998.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 01 of 4 2.20None
Head3 ± 00 of 4 0.90None
Eye3 ± 10 of 4 1.00None
Thoracicoabdominal ganglion5 ± 10 of 4 1.70None
Salivary gland13 ± 30 of 4 3.88None
Crop10 ± 21 of 4 3.00None
Midgut5 ± 10 of 4 1.50None
Tubule3 ± 00 of 4 1.10None
Hindgut2 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.38None
Fat body5 ± 10 of 4 1.48None
Ovary0 ± 00 of 4 0.20None
Testis14 ± 04 of 4 4.30Up
Male accessory glands3 ± 10 of 4 0.90None
Virgin spermatheca3 ± 10 of 4 1.07None
Mated spermatheca4 ± 10 of 4 1.27None
Adult carcass4 ± 20 of 4 1.30None
Larval CNS2 ± 10 of 4 0.67None
Larval Salivary gland6 ± 10 of 4 2.02None
Larval midgut6 ± 10 of 4 1.81None
Larval tubule3 ± 10 of 4 1.00None
Larval hindgut4 ± 00 of 4 1.22None
Larval fat body9 ± 50 of 4 2.80None
Larval trachea2 ± 30 of 4 0.73None
Larval carcass0 ± 00 of 4 0.26None
S2 cells (growing)1 ± 00 of 4 0.45None
Whole fly3 ± 11 of 4

Looking for FBgn0053998. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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