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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054003 through 18771 annotations produced 1 hits



CG34003 (nimB3):

Annotation Number : Stencil:2L:13950078:13949638:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054003
Gbrowse : chr2L:13967486-13967926 (-) // 100.0 //
Probeset : 1634806_at
Accessions : protein= NP_001033905;, nucleotide= NM_001038816;
FlyMine data for FBgn0054003.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 0.20Down
Head98 ± 154 of 4 2.00Up
Eye44 ± 114 of 4 0.91None
Thoracicoabdominal ganglion7 ± 00 of 4 0.20Down
Salivary gland7 ± 30 of 4 0.14Down
Crop11 ± 30 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule7 ± 10 of 4 0.20Down
Hindgut24 ± 42 of 4 0.50Down
Heart815 ± 464 of 416.62Up
Fat body954 ± 974 of 419.45Up
Ovary2 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca516 ± 294 of 410.52Up
Mated spermatheca658 ± 234 of 413.42Up
Adult carcass377 ± 204 of 4 7.70Up
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland53 ± 64 of 4 1.09None
Larval midgut4 ± 20 of 4 0.10Down
Larval tubule10 ± 30 of 4 0.20Down
Larval hindgut66 ± 193 of 4 1.35None
Larval fat body3067 ± 2604 of 462.50Up
Larval trachea60 ± 603 of 4 1.23None
Larval carcass27 ± 53 of 4 0.56Down
S2 cells (growing)3 ± 10 of 4 0.07Down
Whole fly49 ± 44 of 4

Looking for FBgn0054003. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime