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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054011 through 18771 annotations produced 1 hits



(CG34011):

Annotation Number : Stencil:2L:5709033:5710282:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054011
Gbrowse : chr2L:5716818-5718067 (+) // 100.0 //
Probeset : 1636582_at
Accessions : protein= NP_001033878;, nucleotide= NM_001038789;
FlyMine data for FBgn0054011.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head4 ± 10 of 4 0.60None
Eye0 ± 00 of 4 0.13Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.70None
Salivary gland8 ± 20 of 4 1.10None
Crop7 ± 10 of 4 1.00None
Midgut6 ± 11 of 4 0.90None
Tubule5 ± 00 of 4 0.70Down
Hindgut4 ± 10 of 4 0.60None
Heart2 ± 10 of 4 0.29None
Fat body7 ± 20 of 4 1.01None
Ovary4 ± 11 of 4 0.60None
Testis32 ± 24 of 4 4.50Up
Male accessory glands4 ± 10 of 4 0.70None
Virgin spermatheca3 ± 10 of 4 0.50None
Mated spermatheca4 ± 10 of 4 0.60None
Adult carcass12 ± 30 of 4 1.70None
Larval CNS4 ± 12 of 4 0.57None
Larval Salivary gland5 ± 10 of 4 0.74None
Larval midgut4 ± 10 of 4 0.63None
Larval tubule7 ± 10 of 4 1.10None
Larval hindgut5 ± 12 of 4 0.77None
Larval fat body4 ± 21 of 4 0.60None
Larval trachea2 ± 10 of 4 0.28Down
Larval carcass6 ± 22 of 4 0.82None
S2 cells (growing)3 ± 10 of 4 0.50None
Whole fly7 ± 11 of 4

Looking for FBgn0054011. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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