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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054012 through 18771 annotations produced 1 hits



(CG34012):

Annotation Number : Stencil:3L:11067007:11066395:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054012
Gbrowse : chr3L:11101963-11102575 (-) // 100.0 //
Probeset : 1636957_s_at
Accessions : protein= NP_001034001;, nucleotide= NM_001038912;
FlyMine data for FBgn0054012.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10Down
Head5 11 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland11 10 of 4 0.20Down
Crop5 11 of 4 0.10Down
Midgut3 00 of 4 0.10Down
Tubule4 10 of 4 0.10Down
Hindgut6 00 of 4 0.10Down
Heart1 00 of 4 0.02Down
Fat body9 40 of 4 0.18Down
Ovary2 00 of 4 0.00Down
Testis692 164 of 412.40Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca4 00 of 4 0.09Down
Mated spermatheca3 10 of 4 0.06Down
Adult carcass4 20 of 4 0.10Down
Larval CNS4 12 of 4 0.08Down
Larval Salivary gland5 00 of 4 0.10Down
Larval midgut3 00 of 4 0.06Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.04Down
Larval fat body52 243 of 4 0.90None
Larval trachea5 21 of 4 0.10Down
Larval carcass6 10 of 4 0.12Down
S2 cells (growing)2 00 of 4 0.04Down
Whole fly55 34 of 4

Looking for FBgn0054012. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime