FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0054021 through 18771 annotations produced 1 hits

(CG34021):

Annotation Number : Stencil:2R:7401699:7402254:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054021
Gbrowse : chr2R:8224491-8225046 (+) // 100.0 //
Probeset : 1625872_at
Accessions : protein= NP_001033942;, nucleotide= NM_001038853;
FlyMine data for FBgn0054021.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	Down
Head	3 ± 1	0 of 4	0.10	Down
Eye	1 ± 0	0 of 4	0.03	Down
Thoracicoabdominal ganglion	8 ± 1	0 of 4	0.10	Down
Salivary gland	27 ± 4	0 of 4	0.46	Down
Crop	12 ± 3	1 of 4	0.20	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	10 ± 0	0 of 4	0.20	Down
Hindgut	5 ± 2	0 of 4	0.10	Down
Heart	4 ± 1	0 of 4	0.07	Down
Fat body	23 ± 8	4 of 4	0.40	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	740 ± 22	4 of 4	12.50	Up
Male accessory glands	5 ± 1	0 of 4	0.10	Down
Virgin spermatheca	24 ± 3	2 of 4	0.42	Down
Mated spermatheca	26 ± 9	3 of 4	0.45	Down
Adult carcass	4 ± 1	0 of 4	0.10	Down
Larval CNS	8 ± 5	2 of 4	0.15	Down
Larval Salivary gland	2 ± 1	0 of 4	0.05	Down
Larval midgut	4 ± 1	0 of 4	0.08	Down
Larval tubule	5 ± 2	0 of 4	0.10	Down
Larval hindgut	5 ± 2	1 of 4	0.09	Down
Larval fat body	83 ± 38	3 of 4	1.40	None
Larval trachea	5 ± 5	2 of 4	0.09	Down
Larval carcass	1 ± 0	0 of 4	0.03	Down
S2 cells (growing)	2 ± 1	0 of 4	0.05	Down
Whole fly	59 ± 1	4 of 4

Looking for FBgn0054021. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720