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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054025 through 18771 annotations produced 1 hits



(CG34025):

Annotation Number : AM01469_revcomp
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054025
Gbrowse : chr3L:2960260-2960741 (-) // 100.0 //
Probeset : 1635510_at
Accessions : protein= NP_001033987;, nucleotide= NM_001038898;
FlyMine data for FBgn0054025.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head0 ± 00 of 4 0.10None
Eye3 ± 20 of 4 0.85None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland7 ± 10 of 4 1.76None
Crop5 ± 11 of 4 1.30None
Midgut2 ± 10 of 4 0.60None
Tubule2 ± 00 of 4 0.50Down
Hindgut2 ± 10 of 4 0.70None
Heart2 ± 11 of 4 0.65None
Fat body3 ± 10 of 4 0.86None
Ovary2 ± 00 of 4 0.60None
Testis15 ± 84 of 4 3.70None
Male accessory glands2 ± 10 of 4 0.70None
Virgin spermatheca1 ± 00 of 4 0.39None
Mated spermatheca4 ± 01 of 4 1.15None
Adult carcass8 ± 11 of 4 2.10Up
Larval CNS1 ± 10 of 4 0.38None
Larval Salivary gland3 ± 10 of 4 0.84None
Larval midgut1 ± 00 of 4 0.42None
Larval tubule4 ± 10 of 4 1.10None
Larval hindgut1 ± 01 of 4 0.46None
Larval fat body4 ± 10 of 4 1.10None
Larval trachea1 ± 10 of 4 0.38None
Larval carcass2 ± 00 of 4 0.52None
S2 cells (growing)3 ± 00 of 4 0.80None
Whole fly4 ± 11 of 4

Looking for FBgn0054025. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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