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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054026 through 18771 annotations produced 1 hits



(CG34026):

Annotation Number : S.CX001047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054026
Gbrowse : chrX:9426641-9428291 (+) // 100.0 //
Probeset : 1636470_at
Accessions : protein= NP_001033839;, nucleotide= NM_001038750;
FlyMine data for FBgn0054026.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head10 ± 71 of 4 0.00Down
Eye3 ± 21 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland5 ± 31 of 4 0.01Down
Crop7 ± 12 of 4 0.00Down
Midgut4751 ± 1564 of 410.20Up
Tubule5 ± 00 of 4 0.00Down
Hindgut4 ± 01 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body1 ± 10 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.01Down
Mated spermatheca3 ± 00 of 4 0.01Down
Adult carcass7 ± 20 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland3 ± 10 of 4 0.01Down
Larval midgut4077 ± 1384 of 4 8.74Up
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut5 ± 02 of 4 0.01Down
Larval fat body7 ± 31 of 4 0.00Down
Larval trachea3 ± 11 of 4 0.01Down
Larval carcass4 ± 02 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly466 ± 1014 of 4

Looking for FBgn0054026. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime