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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054028 through 18771 annotations produced 2 hits



(CG34028):

Annotation Number : HDC18157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054028
Gbrowse : chrX:9405556-9406196 (+) // 100.0 //
Probeset : 1625886_s_at
Accessions : protein= NP_001033838;, nucleotide= NM_001038749;
FlyMine data for FBgn0054028.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.90None
Head1 00 of 4 0.20Down
Eye2 00 of 4 0.36Down
Thoracicoabdominal ganglion1 00 of 4 0.30Down
Salivary gland6 40 of 4 0.93None
Crop1 00 of 4 0.20Down
Midgut0 00 of 4 0.10Down
Tubule3 00 of 4 0.50Down
Hindgut4 10 of 4 0.70None
Heart1 00 of 4 0.18Down
Fat body5 40 of 4 0.84None
Ovary2 10 of 4 0.30Down
Testis2 00 of 4 0.40Down
Male accessory glands5 20 of 4 0.80None
Virgin spermatheca27 34 of 4 4.32Up
Mated spermatheca36 74 of 4 5.60Up
Adult carcass17 30 of 4 2.70Up
Larval CNS5 11 of 4 0.89None
Larval Salivary gland4 10 of 4 0.66None
Larval midgut0 00 of 4 0.11Down
Larval tubule2 00 of 4 0.40Down
Larval hindgut2 00 of 4 0.33Down
Larval fat body2 20 of 4 0.50None
Larval trachea3 20 of 4 0.50None
Larval carcass3 10 of 4 0.53None
S2 cells (growing)1 00 of 4 0.19Down
Whole fly6 10 of 4



(CG34028):

Annotation Number : HDC18157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054028
Gbrowse : chrX:9405556-9406196 (+) // 100.0 //
Probeset : 1634018_at
Accessions : protein= NP_001033838;, nucleotide= NM_001038749;
FlyMine data for FBgn0054028.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head0 00 of 4 0.60None
Eye1 00 of 4 4.19None
Thoracicoabdominal ganglion0 00 of 4 0.80None
Salivary gland0 00 of 4 1.81None
Crop0 00 of 4 0.80None
Midgut0 00 of 4 0.40None
Tubule2 00 of 4 6.00Up
Hindgut0 00 of 4 0.40None
Heart0 00 of 4 0.50None
Fat body1 10 of 4 3.69None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 0.30None
Male accessory glands0 00 of 4 1.00None
Virgin spermatheca12 14 of 430.75Up
Mated spermatheca18 53 of 446.44None
Adult carcass4 20 of 410.10None
Larval CNS0 00 of 4 1.25None
Larval Salivary gland0 00 of 4 0.50None
Larval midgut0 00 of 4 0.44None
Larval tubule0 00 of 4 0.40None
Larval hindgut0 00 of 4 0.38None
Larval fat body0 00 of 4 1.90None
Larval trachea0 00 of 4 0.62None
Larval carcass0 00 of 4 0.44None
S2 cells (growing)0 00 of 4 0.50None
Whole fly0 00 of 4

Looking for FBgn0054028. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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