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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054030 through 18771 annotations produced 2 hits



(CG34030):

Annotation Number : S.C3L000895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054030
Gbrowse : chr3L:7066575-7068347 (-) // 100.0 //
Probeset : 1628300_s_at
Accessions : protein= NP_001033993;, nucleotide= NM_001038904;
FlyMine data for FBgn0054030.
VDRC has 1 RNAi stocks for FBgn0054030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.80None
Head0 ± 00 of 4 0.10None
Eye2 ± 00 of 4 0.46None
Thoracicoabdominal ganglion4 ± 20 of 4 0.90None
Salivary gland8 ± 10 of 4 1.67None
Crop3 ± 00 of 4 0.70None
Midgut3 ± 10 of 4 0.60None
Tubule3 ± 00 of 4 0.70None
Hindgut4 ± 10 of 4 0.80None
Heart1 ± 00 of 4 0.22None
Fat body2 ± 10 of 4 0.48None
Ovary0 ± 00 of 4 0.10None
Testis19 ± 34 of 4 3.70Up
Male accessory glands3 ± 00 of 4 0.70None
Virgin spermatheca2 ± 10 of 4 0.48None
Mated spermatheca1 ± 00 of 4 0.20None
Adult carcass3 ± 10 of 4 0.60None
Larval CNS2 ± 10 of 4 0.41None
Larval Salivary gland0 ± 00 of 4 0.18None
Larval midgut1 ± 00 of 4 0.18None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut1 ± 00 of 4 0.20None
Larval fat body3 ± 20 of 4 0.60None
Larval trachea0 ± 00 of 4 0.10None
Larval carcass1 ± 00 of 4 0.37None
S2 cells (growing)2 ± 00 of 4 0.41None
Whole fly5 ± 20 of 4



(CG34030):

Annotation Number : HDC08855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054030
Gbrowse : chr3L:7066575-7068347 (-) // 100.0 //
Probeset : 1635873_at
Accessions : protein= NP_001033993;, nucleotide= NM_001038904;
FlyMine data for FBgn0054030.
VDRC has 1 RNAi stocks for FBgn0054030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 8.20Up
Head1 ± 10 of 4 3.60None
Eye1 ± 00 of 4 2.95None
Thoracicoabdominal ganglion4 ± 20 of 4 8.30None
Salivary gland5 ± 30 of 410.40None
Crop1 ± 00 of 4 3.20None
Midgut3 ± 10 of 4 6.50None
Tubule2 ± 00 of 4 4.60Up
Hindgut3 ± 10 of 4 6.20None
Heart1 ± 00 of 4 2.65None
Fat body2 ± 10 of 4 4.00None
Ovary0 ± 00 of 4 0.60None
Testis16 ± 14 of 433.90Up
Male accessory glands4 ± 10 of 4 8.50None
Virgin spermatheca3 ± 10 of 4 5.95None
Mated spermatheca3 ± 00 of 4 7.35Up
Adult carcass2 ± 00 of 4 4.30None
Larval CNS2 ± 00 of 4 5.50Up
Larval Salivary gland5 ± 20 of 410.65None
Larval midgut2 ± 00 of 4 5.75None
Larval tubule2 ± 00 of 4 4.10None
Larval hindgut1 ± 10 of 4 3.20None
Larval fat body3 ± 20 of 4 7.60None
Larval trachea2 ± 10 of 4 4.65None
Larval carcass0 ± 00 of 4 1.70Up
S2 cells (growing)2 ± 10 of 4 4.20None
Whole fly0 ± 00 of 4

Looking for FBgn0054030. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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