Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054031 through 18771 annotations produced 1 hits



(CR34031):

Annotation Number : HDC11617
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054031
Gbrowse : chr3L:23177407-23181306 (+) // 100.0 //
Probeset : 1630387_at
Accessions : protein= NP_001034037;, nucleotide= NM_001038948;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0054031.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head1 ± 00 of 4 0.50None
Eye2 ± 00 of 4 0.85None
Thoracicoabdominal ganglion2 ± 00 of 4 1.00None
Salivary gland1 ± 00 of 4 0.69None
Crop1 ± 00 of 4 0.50None
Midgut1 ± 00 of 4 0.50None
Tubule1 ± 00 of 4 0.40Down
Hindgut10 ± 12 of 4 4.20Up
Heart0 ± 00 of 4 0.20None
Fat body3 ± 20 of 4 1.38None
Ovary2 ± 10 of 4 0.80None
Testis6 ± 00 of 4 2.70Up
Male accessory glands3 ± 00 of 4 1.40None
Virgin spermatheca0 ± 00 of 4 0.19None
Mated spermatheca0 ± 00 of 4 0.29None
Adult carcass2 ± 00 of 4 0.90None
Larval CNS2 ± 20 of 4 0.98None
Larval Salivary gland1 ± 00 of 4 0.56None
Larval midgut0 ± 00 of 4 0.23None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut11 ± 13 of 4 4.56Up
Larval fat body1 ± 00 of 4 0.70None
Larval trachea2 ± 10 of 4 0.98None
Larval carcass1 ± 00 of 4 0.44None
S2 cells (growing)15 ± 14 of 4 6.24Up
Whole fly2 ± 00 of 4

Looking for FBgn0054031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime