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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054033 through 18771 annotations produced 1 hits



(CG34033):

Annotation Number : HDC05479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054033
Gbrowse : chr2R:5708073-5708639 (+) // 100.0 //
Probeset : 1634750_at
Accessions : protein= NP_001033937;, nucleotide= NM_001038848;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0054033.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye3 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.05Down
Crop3 ± 10 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body4 ± 10 of 4 0.04Down
Ovary2 ± 10 of 4 0.00Down
Testis14 ± 24 of 4 0.10Down
Male accessory glands6720 ± 1544 of 461.30Up
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass16 ± 70 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.04Down
Larval Salivary gland5 ± 20 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.03Down
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly109 ± 134 of 4

Looking for FBgn0054033. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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