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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054038 through 18771 annotations produced 1 hits



(CG34038):

Annotation Number : Stencil:2R:20211503:20216145:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054038
Gbrowse : chr2R:21055456-21060098 (+) // 100.0 //
Probeset : 1631163_at
Accessions : protein= NP_001033975;, nucleotide= NM_001038886;
FlyMine data for FBgn0054038.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.20Down
Head1 ± 00 of 4 0.10Down
Eye3 ± 00 of 4 0.18Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland25 ± 43 of 4 1.53None
Crop6 ± 11 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut6 ± 01 of 4 0.40Down
Heart3 ± 11 of 4 0.20Down
Fat body12 ± 42 of 4 0.74None
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands6 ± 21 of 4 0.40Down
Virgin spermatheca7 ± 13 of 4 0.47Down
Mated spermatheca2 ± 00 of 4 0.13Down
Adult carcass16 ± 41 of 4 1.00None
Larval CNS5 ± 21 of 4 0.32Down
Larval Salivary gland3 ± 10 of 4 0.20Down
Larval midgut1 ± 00 of 4 0.11Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.12Down
Larval fat body4 ± 10 of 4 0.30Down
Larval trachea12 ± 131 of 4 0.78None
Larval carcass4 ± 10 of 4 0.30Down
S2 cells (growing)2 ± 00 of 4 0.17Down
Whole fly16 ± 23 of 4

Looking for FBgn0054038. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime