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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054045 through 18771 annotations produced 1 hits



(CG34045):

Annotation Number : Stencil:2R:14394895:14398908:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054045
Gbrowse : chr2R:15218680-15222693 (+) // 100.0 //
Probeset : 1637093_at
Accessions : protein= NP_001033961;, nucleotide= NM_001038872;
FlyMine data for FBgn0054045.
VDRC has 1 RNAi stocks for FBgn0054045 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.60None
Head3 20 of 4 0.40None
Eye1 00 of 4 0.16Down
Thoracicoabdominal ganglion4 00 of 4 0.60None
Salivary gland7 10 of 4 0.90None
Crop4 10 of 4 0.50None
Midgut29 04 of 4 3.60Up
Tubule2 00 of 4 0.30Down
Hindgut7 20 of 4 0.90None
Heart4 10 of 4 0.48None
Fat body2 20 of 4 0.34Down
Ovary2 00 of 4 0.20Down
Testis2 10 of 4 0.30Down
Male accessory glands4 10 of 4 0.50None
Virgin spermatheca6 00 of 4 0.74None
Mated spermatheca5 20 of 4 0.62None
Adult carcass6 10 of 4 0.80None
Larval CNS5 00 of 4 0.64None
Larval Salivary gland2 00 of 4 0.24Down
Larval midgut13 01 of 4 1.59Up
Larval tubule4 10 of 4 0.50None
Larval hindgut3 10 of 4 0.41None
Larval fat body2 00 of 4 0.20Down
Larval trachea0 00 of 4 0.09Down
Larval carcass4 10 of 4 0.53None
S2 cells (growing)1 00 of 4 0.15Down
Whole fly8 10 of 4

Looking for FBgn0054045. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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