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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0054046 through 18771 annotations produced 1 hits


Annotation Number : HDC16610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054046
Gbrowse : chr3R:27534794-27535514 (+) // 100.0 //
Probeset : 1625383_at
Accessions : protein= NP_001034078;, nucleotide= NM_001038989;
FlyMine data for FBgn0054046.
VDRC has 1 RNAi stocks for FBgn0054046 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head1 00 of 4 0.50None
Eye1 00 of 4 0.34None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland6 20 of 4 2.06None
Crop1 00 of 4 0.40None
Midgut3 10 of 4 0.90None
Tubule2 00 of 4 0.70None
Hindgut1 00 of 4 0.50None
Heart0 00 of 4 0.19None
Fat body2 20 of 4 0.85None
Ovary3 10 of 4 1.10None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca0 00 of 4 0.26None
Mated spermatheca1 00 of 4 0.51None
Adult carcass3 10 of 4 1.10None
Larval CNS1 10 of 4 0.47None
Larval Salivary gland2 00 of 4 0.60None
Larval midgut3 10 of 4 0.96None
Larval tubule1 00 of 4 0.50None
Larval hindgut0 00 of 4 0.19None
Larval fat body2 10 of 4 0.80None
Larval trachea1 00 of 4 0.31None
Larval carcass1 00 of 4 0.31None
S2 cells (growing)1 00 of 4 0.60None
Whole fly3 10 of 4

Looking for FBgn0054046. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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