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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054047 through 18771 annotations produced 2 hits



(CG34047):

Annotation Number : HDC08545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054047
Gbrowse : chr3L:5094205-5099912 (-) // 100.0 //
Probeset : 1628193_s_at
Accessions : protein= NP_001033990;, nucleotide= NM_001038901;
FlyMine data for FBgn0054047.
VDRC has 1 RNAi stocks for FBgn0054047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.90None
Head2 ± 00 of 4 1.40None
Eye2 ± 11 of 4 1.19None
Thoracicoabdominal ganglion3 ± 10 of 4 1.70None
Salivary gland12 ± 50 of 4 6.33None
Crop2 ± 10 of 4 1.10None
Midgut3 ± 10 of 4 1.80None
Tubule2 ± 00 of 4 1.30None
Hindgut3 ± 20 of 4 1.70None
Heart2 ± 10 of 4 1.29None
Fat body5 ± 00 of 4 2.66Up
Ovary2 ± 10 of 4 1.10None
Testis1 ± 00 of 4 0.70None
Male accessory glands3 ± 10 of 4 1.80None
Virgin spermatheca4 ± 00 of 4 1.98None
Mated spermatheca4 ± 10 of 4 2.21None
Adult carcass6 ± 30 of 4 3.10None
Larval CNS2 ± 00 of 4 1.03None
Larval Salivary gland4 ± 10 of 4 2.18None
Larval midgut4 ± 20 of 4 2.41None
Larval tubule2 ± 10 of 4 1.20None
Larval hindgut1 ± 00 of 4 0.80None
Larval fat body7 ± 20 of 4 3.50None
Larval trachea1 ± 10 of 4 0.99None
Larval carcass6 ± 10 of 4 3.01None
S2 cells (growing)2 ± 00 of 4 1.24None
Whole fly2 ± 00 of 4



(CG34047):

Annotation Number : S.C3L000656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054047
Gbrowse : chr3L:5081324-5099912 (-) // 100.0 //
Probeset : 1637333_at
Accessions : protein= NP_001033990;, nucleotide= NM_001038901;
FlyMine data for FBgn0054047.
VDRC has 1 RNAi stocks for FBgn0054047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.80None
Head3 ± 00 of 4 0.90None
Eye2 ± 00 of 4 0.82None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland10 ± 20 of 4 2.82None
Crop5 ± 00 of 4 1.50None
Midgut8 ± 10 of 4 2.30None
Tubule5 ± 00 of 4 1.40Up
Hindgut2 ± 10 of 4 0.80None
Heart3 ± 00 of 4 0.98None
Fat body4 ± 30 of 4 1.35None
Ovary1 ± 00 of 4 0.40None
Testis7 ± 00 of 4 2.00Up
Male accessory glands8 ± 30 of 4 2.40None
Virgin spermatheca5 ± 10 of 4 1.55None
Mated spermatheca4 ± 20 of 4 1.37None
Adult carcass3 ± 10 of 4 0.80None
Larval CNS3 ± 10 of 4 0.97None
Larval Salivary gland1 ± 00 of 4 0.53None
Larval midgut19 ± 14 of 4 5.62Up
Larval tubule3 ± 00 of 4 0.90None
Larval hindgut5 ± 10 of 4 1.45None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea5 ± 30 of 4 1.53None
Larval carcass4 ± 10 of 4 1.33None
S2 cells (growing)1 ± 00 of 4 0.55None
Whole fly3 ± 10 of 4

Looking for FBgn0054047. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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