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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054049 through 18771 annotations produced 1 hits



(CG34049):

Annotation Number : HDC00353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054049
Gbrowse : chr2L:2264454-2265311 (-) // 100.0 //
Probeset : 1626720_at
Accessions : protein= NP_001033871;, nucleotide= NM_001038782;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0054049.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.20Down
Head5 ± 02 of 4 0.30Down
Eye1 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.30Down
Salivary gland12 ± 61 of 4 0.66None
Crop4 ± 02 of 4 0.30Down
Midgut4 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 11 of 4 0.20Down
Heart1 ± 00 of 4 0.08Down
Fat body8 ± 04 of 4 0.43Down
Ovary2 ± 01 of 4 0.10Down
Testis236 ± 134 of 412.40Up
Male accessory glands9 ± 33 of 4 0.50None
Virgin spermatheca7 ± 03 of 4 0.41Down
Mated spermatheca10 ± 34 of 4 0.54None
Adult carcass6 ± 10 of 4 0.30Down
Larval CNS5 ± 14 of 4 0.29Down
Larval Salivary gland6 ± 10 of 4 0.36Down
Larval midgut4 ± 10 of 4 0.24Down
Larval tubule3 ± 00 of 4 0.20Down
Larval hindgut3 ± 01 of 4 0.19Down
Larval fat body13 ± 71 of 4 0.70None
Larval trachea1 ± 11 of 4 0.07Down
Larval carcass1 ± 10 of 4 0.10Down
S2 cells (growing)2 ± 00 of 4 0.13Down
Whole fly19 ± 14 of 4

Looking for FBgn0054049. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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