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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054050 through 18771 annotations produced 1 hits



(CG34050):

Annotation Number : HDC09511
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054050
Gbrowse : chr3L:10937555-10938198 (+) // 99.49 //
Probeset : 1636259_s_at
Accessions : protein= NP_001034000;, nucleotide= NM_001038911;
FlyMine data for FBgn0054050.
VDRC has 1 RNAi stocks for FBgn0054050 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 2.70None
Head2 ± 10 of 4 1.70None
Eye1 ± 00 of 4 1.22None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland4 ± 20 of 4 3.31None
Crop0 ± 00 of 4 0.70None
Midgut0 ± 00 of 4 0.70None
Tubule3 ± 00 of 4 3.10Up
Hindgut1 ± 00 of 4 1.30None
Heart2 ± 00 of 4 2.27None
Fat body4 ± 40 of 4 3.57None
Ovary0 ± 00 of 4 0.50None
Testis0 ± 00 of 4 0.50None
Male accessory glands5 ± 21 of 4 4.40None
Virgin spermatheca4 ± 10 of 4 3.29None
Mated spermatheca4 ± 10 of 4 3.80None
Adult carcass3 ± 10 of 4 2.90None
Larval CNS3 ± 20 of 4 3.06None
Larval Salivary gland3 ± 10 of 4 2.71None
Larval midgut5 ± 10 of 4 4.16None
Larval tubule1 ± 00 of 4 1.20None
Larval hindgut2 ± 10 of 4 2.22None
Larval fat body2 ± 10 of 4 2.10None
Larval trachea3 ± 30 of 4 2.65None
Larval carcass2 ± 00 of 4 1.76None
S2 cells (growing)3 ± 10 of 4 3.12None
Whole fly1 ± 00 of 4

Looking for FBgn0054050. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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