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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0054054 through 18771 annotations produced 1 hits


Annotation Number : HDC05792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054054
Gbrowse : chr2R:7297358-7297928 (-) // 100.0 //
Probeset : 1639730_at
Accessions : protein= NP_001033940;, nucleotide= NM_001038851;
FlyMine data for FBgn0054054.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20None
Head42 24 of 4 3.90Up
Eye31 84 of 4 2.90None
Thoracicoabdominal ganglion1 00 of 4 0.10None
Salivary gland4 20 of 4 0.45None
Crop2 10 of 4 0.20None
Midgut1 00 of 4 0.10None
Tubule3 00 of 4 0.40Down
Hindgut2 00 of 4 0.20None
Heart66 64 of 4 6.12Up
Fat body109 74 of 410.05Up
Ovary1 00 of 4 0.20None
Testis1 00 of 4 0.20None
Male accessory glands2 10 of 4 0.20None
Virgin spermatheca111 94 of 410.22Up
Mated spermatheca99 204 of 4 9.10Up
Adult carcass37 44 of 4 3.40Up
Larval CNS0 00 of 4 0.05None
Larval Salivary gland10 11 of 4 0.96None
Larval midgut2 10 of 4 0.26None
Larval tubule2 00 of 4 0.20None
Larval hindgut6 12 of 4 0.59None
Larval fat body3 20 of 4 0.40None
Larval trachea6 22 of 4 0.55None
Larval carcass1 00 of 4 0.18None
S2 cells (growing)8 11 of 4 0.80None
Whole fly10 33 of 4

Looking for FBgn0054054. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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