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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0054057 through 18771 annotations produced 1 hits



(CG34057):

Annotation Number : CG13904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054057
Gbrowse : chr3L:896114-898667 (+) // 100.0 //
Probeset : 1641619_at
Accessions : protein= NP_001033980; /// NP_001033981;, nucleotide= NM_001038891; /// NM_001038892;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016757 // transferase activity
FlyMine data for FBgn0054057.
BioGrid reports that CG13904 interacts with CG4795 .
VDRC has 1 RNAi stocks for FBgn0054057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 02 of 4 1.10None
Head6 00 of 4 0.40Down
Eye11 12 of 4 0.70None
Thoracicoabdominal ganglion15 10 of 4 0.90None
Salivary gland6 20 of 4 0.41Down
Crop16 20 of 4 1.00None
Midgut17 13 of 4 1.00None
Tubule9 00 of 4 0.50Down
Hindgut34 20 of 4 2.10Up
Heart6 10 of 4 0.40Down
Fat body7 40 of 4 0.48Down
Ovary6 00 of 4 0.40Down
Testis7 10 of 4 0.50Down
Male accessory glands871 634 of 452.90Up
Virgin spermatheca5 20 of 4 0.36Down
Mated spermatheca5 10 of 4 0.32Down
Adult carcass8 40 of 4 0.50None
Larval CNS14 13 of 4 0.90None
Larval Salivary gland9 11 of 4 0.58Down
Larval midgut14 22 of 4 0.87None
Larval tubule10 10 of 4 0.60Down
Larval hindgut12 00 of 4 0.78None
Larval fat body13 50 of 4 0.80None
Larval trachea20 44 of 4 1.24None
Larval carcass16 20 of 4 1.01None
S2 cells (growing)10 20 of 4 0.64None
Whole fly16 11 of 4

Looking for FBgn0054057. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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