FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0058002 through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase AGGG (CG40002):

Annotation Number : CG40002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058002
Gbrowse : chr3LHet:459585-460350 (+) // 100.0 // /// chr3LHet:410557-411269 (+) // 89.77 //
Probeset : 1634613_s_at
Accessions : protein= NP_001015476; /// NP_001163845;, nucleotide= NM_001015476; /// NM_001170374;
FlyMine data for FBgn0058002.
VDRC has 1 RNAi stocks for FBgn0058002 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	782 ± 18	4 of 4	1.10	None
Head	922 ± 41	4 of 4	1.30	Up
Eye	1226 ± 72	4 of 4	1.68	Up
Thoracicoabdominal ganglion	1034 ± 18	4 of 4	1.40	Up
Salivary gland	784 ± 89	4 of 4	1.07	None
Crop	813 ± 23	4 of 4	1.10	None
Midgut	1019 ± 31	4 of 4	1.40	Up
Tubule	523 ± 22	4 of 4	0.70	Down
Hindgut	1148 ± 66	4 of 4	1.60	Up
Heart	821 ± 30	4 of 4	1.13	None
Fat body	1937 ± 183	4 of 4	2.65	Up
Ovary	730 ± 49	4 of 4	1.00	None
Testis	229 ± 12	4 of 4	0.30	Down
Male accessory glands	876 ± 28	4 of 4	1.20	None
Virgin spermatheca	603 ± 22	4 of 4	0.83	None
Mated spermatheca	618 ± 21	4 of 4	0.85	None
Adult carcass	1430 ± 76	4 of 4	2.00	Up
Larval CNS	1204 ± 213	4 of 4	1.65	Up
Larval Salivary gland	707 ± 19	4 of 4	0.97	None
Larval midgut	1254 ± 20	4 of 4	1.72	Up
Larval tubule	767 ± 21	4 of 4	1.10	None
Larval hindgut	1526 ± 68	4 of 4	2.09	Up
Larval fat body	671 ± 70	4 of 4	0.90	None
Larval trachea	444 ± 66	4 of 4	0.61	Down
Larval carcass	1415 ± 211	4 of 4	1.94	Up
S2 cells (growing)	573 ± 4	4 of 4	0.79	None
Whole fly	730 ± 60	4 of 4

Looking for FBgn0058002. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720