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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058068 through 18771 annotations produced 1 hits



/// (CG12413 /// CR40068):

Annotation Number : CG40068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039588 /// FBgn0058068
Gbrowse : chrU:1206487-1206901 (+) // 100.0 // /// chr3R:24369519-24369947 (-) // 100.0 //
Probeset : 1637614_s_at
Accessions : protein= NP_001015355; /// NP_651621;, nucleotide= NM_001015355; /// NM_143364;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence o
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activi
FlyMine data for FBgn0039588 /// FBgn0058068.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 21 of 4 1.10None
Head7 ± 10 of 4 0.60None
Eye2 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion13 ± 00 of 4 1.00None
Salivary gland7 ± 00 of 4 0.53Down
Crop1 ± 00 of 4 0.10Down
Midgut17 ± 10 of 4 1.20None
Tubule2 ± 00 of 4 0.20Down
Hindgut6 ± 20 of 4 0.50Down
Heart3 ± 10 of 4 0.22Down
Fat body12 ± 70 of 4 0.90None
Ovary10 ± 10 of 4 0.80None
Testis8 ± 30 of 4 0.60None
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca2 ± 00 of 4 0.15Down
Mated spermatheca5 ± 20 of 4 0.37Down
Adult carcass3 ± 00 of 4 0.30Down
Larval CNS8 ± 30 of 4 0.59None
Larval Salivary gland6 ± 10 of 4 0.50Down
Larval midgut10 ± 20 of 4 0.76None
Larval tubule17 ± 10 of 4 1.20None
Larval hindgut6 ± 20 of 4 0.48None
Larval fat body3 ± 00 of 4 0.30Down
Larval trachea5 ± 40 of 4 0.39Down
Larval carcass3 ± 00 of 4 0.25Down
S2 cells (growing)19 ± 20 of 4 1.39None
Whole fly13 ± 20 of 4

Looking for FBgn0058068. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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