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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058160 through 18771 annotations produced 1 hits



(CG40160):

Annotation Number : CG40160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058160
Gbrowse : chr3LHet:1568495-1572483 (+) // 100.0 //
Probeset : 1636647_s_at
Accessions : protein= NP_001015212; /// NP_001015213; /// NP_001015214; /// NP_001163855; /// NP_001163856;, nucleotide= NM_001015212; /// NM_001015213; /// NM_001015214; /// NM_001170384; /// NM_001170385;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0058160.
VDRC has 1 RNAi stocks for FBgn0058160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 34 of 4 0.20Down
Head452 ± 274 of 4 1.30Up
Eye460 ± 174 of 4 1.35Up
Thoracicoabdominal ganglion81 ± 14 of 4 0.20Down
Salivary gland1492 ± 464 of 4 4.36Up
Crop966 ± 214 of 4 2.80Up
Midgut681 ± 154 of 4 2.00Up
Tubule340 ± 534 of 4 1.00None
Hindgut799 ± 84 of 4 2.30Up
Heart645 ± 74 of 4 1.89Up
Fat body498 ± 324 of 4 1.46Up
Ovary461 ± 84 of 4 1.40Up
Testis85 ± 24 of 4 0.20Down
Male accessory glands750 ± 254 of 4 2.20Up
Virgin spermatheca1369 ± 504 of 4 4.00Up
Mated spermatheca1224 ± 324 of 4 3.58Up
Adult carcass454 ± 224 of 4 1.30Up
Larval CNS149 ± 54 of 4 0.44Down
Larval Salivary gland601 ± 214 of 4 1.76Up
Larval midgut518 ± 174 of 4 1.51Up
Larval tubule739 ± 344 of 4 2.20Up
Larval hindgut846 ± 194 of 4 2.47Up
Larval fat body948 ± 1534 of 4 2.80Up
Larval trachea1508 ± 314 of 4 4.41Up
Larval carcass1018 ± 554 of 4 2.98Up
S2 cells (growing)20 ± 04 of 4 0.06Down
Whole fly342 ± 154 of 4

Looking for FBgn0058160. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime