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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058182 through 18771 annotations produced 1 hits



(CR40182):

Annotation Number : CG40182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058182
Gbrowse : chr3RHet:836426-860140 (-) // 100.0 //
Probeset : 1640993_at
Accessions : protein= NP_001015180;, nucleotide= NM_001015180;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotati
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0058182.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60Down
Head1 00 of 4 1.20None
Eye0 00 of 4 0.73None
Thoracicoabdominal ganglion2 00 of 4 1.60None
Salivary gland7 20 of 4 5.90None
Crop1 00 of 4 1.50None
Midgut3 10 of 4 2.60None
Tubule2 00 of 4 1.90Up
Hindgut1 00 of 4 0.90None
Heart0 00 of 4 0.48Down
Fat body1 00 of 4 1.04None
Ovary1 00 of 4 0.90None
Testis1 00 of 4 1.50None
Male accessory glands5 20 of 4 4.30None
Virgin spermatheca1 00 of 4 1.54None
Mated spermatheca2 00 of 4 1.73None
Adult carcass2 00 of 4 1.70None
Larval CNS1 00 of 4 0.88None
Larval Salivary gland1 00 of 4 1.35None
Larval midgut1 00 of 4 1.60Up
Larval tubule2 00 of 4 1.80None
Larval hindgut1 00 of 4 1.46None
Larval fat body3 20 of 4 3.00None
Larval trachea0 00 of 4 0.71None
Larval carcass1 00 of 4 0.85None
S2 cells (growing)2 00 of 4 1.75Up
Whole fly1 00 of 4

Looking for FBgn0058182. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime