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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058188 through 18771 annotations produced 3 hits



():

Annotation Number : CG40188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrU:2230375-2236006 (+) // 100.0 //
Probeset : 1634802_at
Accessions : protein= NP_001015179;, nucleotide= NM_001015179;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.20None
Head1 ± 00 of 4 1.10None
Eye0 ± 00 of 4 0.41None
Thoracicoabdominal ganglion2 ± 10 of 4 2.00None
Salivary gland3 ± 10 of 4 2.53None
Crop1 ± 10 of 4 1.50None
Midgut1 ± 00 of 4 1.00None
Tubule1 ± 00 of 4 1.10None
Hindgut1 ± 00 of 4 0.70None
Heart1 ± 00 of 4 1.51None
Fat body1 ± 20 of 4 1.41None
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.90None
Male accessory glands1 ± 00 of 4 0.70None
Virgin spermatheca0 ± 00 of 4 0.49None
Mated spermatheca1 ± 00 of 4 0.88None
Adult carcass2 ± 10 of 4 1.90None
Larval CNS1 ± 10 of 4 1.22None
Larval Salivary gland2 ± 10 of 4 1.98None
Larval midgut1 ± 10 of 4 1.33None
Larval tubule1 ± 00 of 4 1.10None
Larval hindgut0 ± 00 of 4 0.25None
Larval fat body0 ± 00 of 4 0.60None
Larval trachea0 ± 00 of 4 0.76None
Larval carcass0 ± 00 of 4 0.65None
S2 cells (growing)2 ± 00 of 4 2.20None
Whole fly1 ± 00 of 4



(CG40188):

Annotation Number : CG40188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058188
Gbrowse : chrU:2230375-2236006 (+) // 100.0 //
Probeset : 1636832_a_at
Accessions : protein= NP_001015179;, nucleotide= NM_001015179;
FlyMine data for FBgn0058188.
VDRC has 1 RNAi stocks for FBgn0058188 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.10None
Head4 ± 00 of 4 1.50None
Eye2 ± 10 of 4 0.91None
Thoracicoabdominal ganglion2 ± 10 of 4 1.00None
Salivary gland8 ± 21 of 4 3.28None
Crop5 ± 11 of 4 2.20None
Midgut3 ± 00 of 4 1.20None
Tubule3 ± 00 of 4 1.20None
Hindgut3 ± 10 of 4 1.30None
Heart2 ± 10 of 4 1.01None
Fat body9 ± 21 of 4 3.50Up
Ovary1 ± 00 of 4 0.60None
Testis6 ± 03 of 4 2.40None
Male accessory glands4 ± 10 of 4 1.70None
Virgin spermatheca2 ± 00 of 4 0.95None
Mated spermatheca3 ± 00 of 4 1.36None
Adult carcass3 ± 10 of 4 1.40None
Larval CNS2 ± 20 of 4 1.02None
Larval Salivary gland3 ± 10 of 4 1.36None
Larval midgut1 ± 00 of 4 0.61None
Larval tubule4 ± 10 of 4 1.60None
Larval hindgut1 ± 00 of 4 0.63None
Larval fat body6 ± 11 of 4 2.20None
Larval trachea3 ± 30 of 4 1.19None
Larval carcass1 ± 00 of 4 0.39None
S2 cells (growing)2 ± 00 of 4 0.94None
Whole fly2 ± 10 of 4



(CG40188):

Annotation Number : CG40188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058188
Gbrowse : chrU:2232884-2234202 (+) // 100.0 //
Probeset : 1626005_at
Accessions : protein= NP_001015179;, nucleotide= NM_001015179;
FlyMine data for FBgn0058188.
VDRC has 1 RNAi stocks for FBgn0058188 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 6.50None
Head1 ± 00 of 4 3.00None
Eye1 ± 00 of 4 4.18None
Thoracicoabdominal ganglion2 ± 00 of 4 5.70None
Salivary gland10 ± 40 of 423.94None
Crop5 ± 11 of 412.90None
Midgut1 ± 00 of 4 4.20None
Tubule2 ± 00 of 4 4.60Up
Hindgut1 ± 00 of 4 3.10None
Heart0 ± 00 of 4 2.29None
Fat body5 ± 71 of 413.82None
Ovary0 ± 00 of 4 1.40None
Testis8 ± 12 of 419.10Up
Male accessory glands4 ± 10 of 4 9.90None
Virgin spermatheca1 ± 00 of 4 3.47None
Mated spermatheca1 ± 00 of 4 2.24None
Adult carcass5 ± 41 of 413.00None
Larval CNS2 ± 10 of 4 5.06Up
Larval Salivary gland0 ± 00 of 4 1.71None
Larval midgut1 ± 00 of 4 2.82None
Larval tubule2 ± 00 of 4 5.10None
Larval hindgut2 ± 00 of 4 5.65None
Larval fat body6 ± 01 of 414.30Up
Larval trachea0 ± 00 of 4 2.06None
Larval carcass1 ± 00 of 4 3.06None
S2 cells (growing)1 ± 00 of 4 3.06None
Whole fly0 ± 00 of 4

Looking for FBgn0058188. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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