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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058198 through 18771 annotations produced 1 hits



(CG40198):

Annotation Number : CG40198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058198
Gbrowse : chr3RHet:2505271-2505998 (-) // 100.0 //
Probeset : 1634162_at
Accessions : protein= NP_001015164;, nucleotide= NM_001015164;
FlyMine data for FBgn0058198.
BDGP gene expression has embryonic in situ data for CG40198: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0058198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head36 ± 64 of 4 2.00Up
Eye2 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland9 ± 30 of 4 0.50None
Crop931 ± 314 of 450.40Up
Midgut54 ± 44 of 4 2.90Up
Tubule3 ± 00 of 4 0.20Down
Hindgut38 ± 14 of 4 2.10Up
Heart3 ± 00 of 4 0.18Down
Fat body3 ± 10 of 4 0.17Down
Ovary1 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands6 ± 10 of 4 0.40Down
Virgin spermatheca1 ± 00 of 4 0.10Down
Mated spermatheca2 ± 00 of 4 0.11Down
Adult carcass28 ± 23 of 4 1.50None
Larval CNS1 ± 10 of 4 0.09Down
Larval Salivary gland4 ± 00 of 4 0.23Down
Larval midgut2 ± 00 of 4 0.12Down
Larval tubule5 ± 10 of 4 0.30Down
Larval hindgut41 ± 123 of 4 2.24None
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea129 ± 414 of 4 7.02Up
Larval carcass1085 ± 2954 of 458.74Up
S2 cells (growing)3 ± 10 of 4 0.19Down
Whole fly18 ± 33 of 4

Looking for FBgn0058198. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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